SMTL ID : 1jnr.1

Structure of adenylylsulfate reductase from the hyperthermophilic Archaeoglobus fulgidus at 1.6 resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-oligomer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: G.29, G.30, G.31, F.32, S.33, E.56, K.57, S.63, G.64, A.65, V.66, L.70, A.72, I.73, N.74, V.174, F.175, I.176, A.213, T.214, G.215, W.234, Y.235, A.236, D.239, S.242, M.365, S.397, H.398, G.438, D.439, F.448, S.449, S.452 Chain B: W.48 33 PLIP interactions: 32 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.234, A:Y.235, A:Y.235, B:W.48 Hydrogen bonds: A:G.30, A:G.30, A:F.32, A:S.33, A:S.33, A:S.33, A:K.57, A:A.65, A:A.72, A:A.72, A:N.74, A:N.74, A:I.176, A:S.242, A:S.242, A:S.397, A:D.439, A:S.449, A:S.452 Water bridges: A:G.31, A:G.34, A:E.56, A:K.57, A:G.64, A:V.66, A:T.214, A:G.215, A:G.215 pi-Cation interactions: A:K.57 FAD.5: 35 residues within 4Å: Chain C: G.29, G.30, G.31, F.32, S.33, E.56, K.57, S.63, G.64, A.65, V.66, L.70, A.72, I.73, N.74, V.174, F.175, I.176, A.213, T.214, G.215, W.234, Y.235, A.236, D.239, S.242, M.365, S.397, H.398, G.438, D.439, F.448, S.449, S.452 Chain D: W.48 31 PLIP interactions: 30 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:Y.235, C:Y.235, D:W.48 Hydrogen bonds: C:G.30, C:G.30, C:F.32, C:S.33, C:S.33, C:S.33, C:G.34, C:K.57, C:K.57, C:A.65, C:A.72, C:A.72, C:N.74, C:N.74, C:I.176, C:G.215, C:S.242, C:S.242, C:S.397, C:D.439, C:D.439, C:S.449, C:S.452 Water bridges: C:G.31, C:E.56, C:G.64, C:S.242, C:C.440

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: K.267, D.268, L.372, Q.376, E.386 Chain C: Y.528, R.545, L.549 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:D.268, A:Q.376, A:E.386, C:Y.528, C:R.545 GOL.6: 8 residues within 4Å: Chain C: K.181, P.186, A.250, G.251, K.620, D.622, A.623, E.624 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:K.181, C:K.620, C:A.623, C:E.624, C:E.624 Water bridges: C:K.249, C:A.250 GOL.7: 7 residues within 4Å: Chain C: F.264, F.277, A.284, Y.292, R.317, N.318, V.321 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Y.292, C:Y.292, C:N.318 Water bridges: C:F.264, C:R.317, C:R.317, C:N.318 GOL.8: 8 residues within 4Å: Chain A: Y.528, R.545, L.549 Chain C: K.267, D.268, L.372, Q.376, E.386 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:D.268, C:D.268, C:Q.376, C:E.386, A:R.545 Water bridges: C:E.386, A:E.527, A:E.527

4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 13 residues within 4Å: Chain B: S.3, C.25, P.26, L.29, M.30, N.41, C.47, W.48, E.49, C.50, Y.51, S.52, C.53 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.25, B:C.47, B:C.50, B:C.53 SF4.4: 13 residues within 4Å: Chain B: V.5, C.10, D.11, G.12, C.13, T.19, A.20, C.21, A.39, C.57, P.58, Q.59, I.62 5 PLIP interactions: 5 interactions with chain B, Salt bridges: B:D.11 Metal complexes: B:C.10, B:C.13, B:C.21, B:C.57 SF4.9: 13 residues within 4Å: Chain D: S.3, C.25, P.26, L.29, M.30, N.41, C.47, W.48, E.49, C.50, Y.51, S.52, C.53 4 PLIP interactions: 4 interactions with chain D, Metal complexes: D:C.25, D:C.47, D:C.50, D:C.53 SF4.10: 14 residues within 4Å: Chain D: V.5, C.10, D.11, G.12, C.13, T.19, A.20, C.21, L.32, A.39, C.57, P.58, Q.59, I.62 5 PLIP interactions: 5 interactions with chain D, Salt bridges: D:D.11 Metal complexes: D:C.10, D:C.13, D:C.21, D:C.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fritz, G. et al., Structure of adenylylsulfate reductase from the hyperthermophilic Archaeoglobus fulgidus at 1.6-A resolution. Proc.Natl.Acad.Sci.USA (2002)

Release Date

2002-02-27

Peptides

adenylylsulfate reductase: AC
adenylylsulfate reductase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

adenylylsulfate reductase

adenylylsulfate reductase

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