SMTL ID : 1jpv.1

Crystal Structure of 5'-deoxy-5'-methylthioadenosine phosphorylase complexed with SO4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.21, R.86, G.88, T.89 Chain D: R.43 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:G.21, A:Y.87, A:T.89, A:T.89 Water bridges: A:D.22, A:D.22, D:R.43 Salt bridges: A:R.86, D:R.43 SO4.2: 6 residues within 4Å: Chain B: G.21, R.86, Y.87, G.88, T.89 Chain C: R.43 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:G.21, B:Y.87, B:T.89 Water bridges: B:D.22, B:D.22, B:T.89, B:T.89, B:E.180 Salt bridges: B:R.25, B:R.86, C:R.43 SO4.3: 6 residues within 4Å: Chain B: R.43 Chain C: G.21, R.86, Y.87, G.88, T.89 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:G.21, C:Y.87, C:T.89 Water bridges: C:E.180 Salt bridges: C:R.86, B:R.43 SO4.4: 5 residues within 4Å: Chain A: R.43 Chain D: G.21, R.86, G.88, T.89 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:G.21, D:Y.87, D:T.89 Water bridges: D:D.22, D:D.22, D:E.180, A:R.43 Salt bridges: D:R.86, A:R.43 SO4.5: 6 residues within 4Å: Chain E: G.21, R.86, Y.87, G.88, T.89 Chain F: R.43 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:G.21, E:Y.87, E:T.89 Water bridges: E:D.22, E:D.22, E:T.89 Salt bridges: E:R.25, E:R.86, F:R.43 SO4.6: 6 residues within 4Å: Chain E: R.43 Chain F: G.21, R.86, Y.87, G.88, T.89 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:G.21, F:Y.87, F:T.89, F:T.89 Salt bridges: F:R.86, E:R.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleby, T.C. et al., Three-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus. J.Biol.Chem. (2001)

Release Date

2001-10-26

Peptides

5'-deoxy-5'-methylthioadenosine phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

5'-deoxy-5'-methylthioadenosine phosphorylase

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