- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.3: 25 residues within 4Å:- Chain A: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:A.124
- Hydrogen bonds: A:D.39, A:G.96, A:K.97, A:K.97, A:K.97, A:D.100, A:T.118, A:T.118, A:S.121, A:S.121, A:S.127, A:Y.133, A:Y.133
- Water bridges: A:G.95, A:G.95, A:T.122, A:V.131, A:H.274, A:H.274
- pi-Stacking: A:H.274
NAD.6: 25 residues within 4Å:- Chain B: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:A.124
- Hydrogen bonds: B:D.39, B:G.96, B:K.97, B:K.97, B:K.97, B:D.100, B:T.118, B:T.118, B:S.121, B:S.121, B:S.127, B:Y.133, B:Y.133
- Water bridges: B:G.95, B:G.95, B:T.122, B:V.131, B:H.274, B:H.274
- pi-Stacking: B:H.274
NAD.9: 25 residues within 4Å:- Chain C: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:A.124
- Hydrogen bonds: C:D.39, C:G.96, C:K.97, C:K.97, C:K.97, C:D.100, C:T.118, C:T.118, C:S.121, C:S.121, C:S.127, C:Y.133, C:Y.133
- Water bridges: C:G.95, C:G.95, C:T.122, C:V.131, C:H.274, C:H.274
- pi-Stacking: C:H.274
NAD.12: 25 residues within 4Å:- Chain D: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
21 PLIP interactions:21 interactions with chain D- Hydrophobic interactions: D:A.124
- Hydrogen bonds: D:D.39, D:G.96, D:K.97, D:K.97, D:K.97, D:D.100, D:T.118, D:T.118, D:S.121, D:S.121, D:S.127, D:Y.133, D:Y.133
- Water bridges: D:G.95, D:G.95, D:T.122, D:V.131, D:H.274, D:H.274
- pi-Stacking: D:H.274
NAD.15: 25 residues within 4Å:- Chain E: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
19 PLIP interactions:19 interactions with chain E- Hydrophobic interactions: E:A.124
- Hydrogen bonds: E:D.39, E:G.96, E:K.97, E:K.97, E:K.97, E:D.100, E:T.118, E:S.121, E:S.121, E:S.127, E:Y.133
- Water bridges: E:G.95, E:G.95, E:T.122, E:V.131, E:H.274, E:H.274
- pi-Stacking: E:H.274
NAD.18: 25 residues within 4Å:- Chain F: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
19 PLIP interactions:19 interactions with chain F- Hydrophobic interactions: F:A.124
- Hydrogen bonds: F:D.39, F:G.96, F:K.97, F:K.97, F:K.97, F:D.100, F:T.118, F:S.121, F:S.121, F:S.127, F:Y.133
- Water bridges: F:G.95, F:G.95, F:T.122, F:V.131, F:H.274, F:H.274
- pi-Stacking: F:H.274
NAD.21: 25 residues within 4Å:- Chain G: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
19 PLIP interactions:19 interactions with chain G- Hydrophobic interactions: G:A.124
- Hydrogen bonds: G:D.39, G:G.96, G:K.97, G:K.97, G:K.97, G:D.100, G:T.118, G:S.121, G:S.121, G:S.127, G:Y.133
- Water bridges: G:G.95, G:G.95, G:T.122, G:V.131, G:H.274, G:H.274
- pi-Stacking: G:H.274
NAD.24: 25 residues within 4Å:- Chain H: D.39, I.41, V.42, I.45, G.95, G.96, K.97, D.100, K.103, T.118, S.121, T.122, D.123, A.124, S.127, L.129, S.130, V.131, Y.133, A.162, P.163, L.166, D.173, F.247, H.274
19 PLIP interactions:19 interactions with chain H- Hydrophobic interactions: H:A.124
- Hydrogen bonds: H:D.39, H:G.96, H:K.97, H:K.97, H:K.97, H:D.100, H:T.118, H:S.121, H:S.121, H:S.127, H:Y.133
- Water bridges: H:G.95, H:G.95, H:T.122, H:V.131, H:H.274, H:H.274
- pi-Stacking: H:H.274
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruzheinikov, S.N. et al., Glycerol dehydrogenase. structure, specificity, and mechanism of a family III polyol dehydrogenase. Structure (2001)
- Release Date
- 2001-10-01
- Peptides
- Glycerol dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ruzheinikov, S.N. et al., Glycerol dehydrogenase. structure, specificity, and mechanism of a family III polyol dehydrogenase. Structure (2001)
- Release Date
- 2001-10-01
- Peptides
- Glycerol dehydrogenase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A