SMTL ID : 1js9.2 (4 other biounits)

Brome Mosaic Virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-15-mer

Ligands

10 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 4 residues within 4Å: Ligands: MG.4, MG.7, MG.10, MG.13 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: E.84 Chain B: E.84 Chain C: E.84, T.145 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A Metal complexes: C:E.84, C:E.84, B:E.84, A:E.84 MG.4: 4 residues within 4Å: Ligands: MG.1, MG.7, MG.10, MG.13 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain D: E.84 Chain E: E.84 Chain F: E.84, T.145 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E, 2 interactions with chain F Metal complexes: D:E.84, E:E.84, F:E.84, F:E.84 MG.7: 4 residues within 4Å: Ligands: MG.1, MG.4, MG.10, MG.13 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain G: E.84 Chain H: E.84 Chain I: E.84, T.145 4 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G, 2 interactions with chain I Metal complexes: H:E.84, G:E.84, I:E.84, I:E.84 MG.10: 4 residues within 4Å: Ligands: MG.1, MG.4, MG.7, MG.13 No protein-ligand interaction detected (PLIP) MG.12: 4 residues within 4Å: Chain J: E.84 Chain K: E.84 Chain L: E.84, T.145 4 PLIP interactions: 1 interactions with chain K, 2 interactions with chain L, 1 interactions with chain J Metal complexes: K:E.84, L:E.84, L:E.84, J:E.84 MG.13: 4 residues within 4Å: Ligands: MG.1, MG.4, MG.7, MG.10 No protein-ligand interaction detected (PLIP) MG.15: 4 residues within 4Å: Chain M: E.84 Chain N: E.84 Chain O: E.84, T.145 4 PLIP interactions: 1 interactions with chain N, 1 interactions with chain M, 2 interactions with chain O Metal complexes: N:E.84, M:E.84, O:E.84, O:E.84

5 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 1 residues within 4Å: Chain F: Q.28 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Q.28 P6G.5: 1 residues within 4Å: Chain I: Q.28 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:Q.28 P6G.8: 1 residues within 4Å: Chain L: Q.28 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:Q.28 P6G.11: 1 residues within 4Å: Chain O: Q.28 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:Q.28 P6G.14: 1 residues within 4Å: Chain C: Q.28 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, R.W. et al., The crystallographic structure of brome mosaic virus. J.Mol.Biol. (2002)

Release Date

2002-04-03

Peptides

Coat protein: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

Coat protein

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