SMTL ID : 1js9.3 (4 other biounits)

Brome Mosaic Virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-18-mer

Ligands

12 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: E.84 Chain B: E.84 Chain C: E.84, T.145 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A Metal complexes: C:E.84, C:E.84, B:E.84, A:E.84 MG.4: 1 residues within 4Å: Ligands: MG.1 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain D: E.84 Chain E: E.84 Chain F: E.84, T.145 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E, 1 interactions with chain D Metal complexes: F:E.84, F:E.84, E:E.84, D:E.84 MG.7: 1 residues within 4Å: Ligands: MG.10 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain G: E.84 Chain H: E.84 Chain I: E.84, T.145 4 PLIP interactions: 2 interactions with chain I, 1 interactions with chain H, 1 interactions with chain G Metal complexes: I:E.84, I:E.84, H:E.84, G:E.84 MG.10: 1 residues within 4Å: Ligands: MG.7 No protein-ligand interaction detected (PLIP) MG.12: 4 residues within 4Å: Chain J: E.84 Chain K: E.84 Chain L: E.84, T.145 4 PLIP interactions: 1 interactions with chain J, 1 interactions with chain K, 2 interactions with chain L Metal complexes: J:E.84, K:E.84, L:E.84, L:E.84 MG.13: 1 residues within 4Å: Ligands: MG.16 No protein-ligand interaction detected (PLIP) MG.15: 4 residues within 4Å: Chain M: E.84 Chain N: E.84 Chain O: E.84, T.145 4 PLIP interactions: 1 interactions with chain N, 1 interactions with chain M, 2 interactions with chain O Metal complexes: N:E.84, M:E.84, O:E.84, O:E.84 MG.16: 1 residues within 4Å: Ligands: MG.13 No protein-ligand interaction detected (PLIP) MG.18: 4 residues within 4Å: Chain P: E.84 Chain Q: E.84 Chain R: E.84, T.145 4 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain P, 2 interactions with chain R Metal complexes: Q:E.84, P:E.84, R:E.84, R:E.84

6 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 9 residues within 4Å: Chain F: Q.28 Chain K: V.32 Chain N: Q.28, V.30 Chain R: Q.28, V.30, V.32 Ligands: P6G.11, P6G.14 2 PLIP interactions: 1 interactions with chain R, 1 interactions with chain F Hydrogen bonds: R:Q.28, F:Q.28 P6G.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) P6G.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) P6G.11: 9 residues within 4Å: Chain B: Q.28, V.30 Chain F: Q.28, V.30, V.32 Chain I: Q.28 Chain N: V.32 Ligands: P6G.2, P6G.14 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain F Hydrogen bonds: I:Q.28, F:Q.28 P6G.14: 9 residues within 4Å: Chain B: V.32 Chain I: Q.28, V.30, V.32 Chain K: Q.28, V.30 Chain R: Q.28 Ligands: P6G.2, P6G.11 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain R Hydrogen bonds: I:Q.28, R:Q.28 P6G.17: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, R.W. et al., The crystallographic structure of brome mosaic virus. J.Mol.Biol. (2002)

Release Date

2002-04-03

Peptides

Coat protein: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

P
A

Q
B

R
C

Coat protein

Related Entries With Identical Sequence