SMTL ID : 1jsm.2 (1 other biounit)

STRUCTURE OF H5 AVIAN HAEMAGGLUTININ

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.165, N.236, D.237, A.238 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain C: N.165, N.236, D.237, A.238 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain D: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 4 residues within 4Å: Chain E: N.165, N.236, D.237, A.238 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 3 residues within 4Å: Chain F: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: Q.15, K.22, N.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.22 Hydrogen bonds: A:Q.15 NAG.5: 3 residues within 4Å: Chain A: N.275, T.276, N.286 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain C: N.11 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain C: Q.15, K.22, N.23 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.22 Hydrogen bonds: C:Q.15 NAG.10: 3 residues within 4Å: Chain C: N.275, T.276, N.286 No protein-ligand interaction detected (PLIP) NAG.13: 1 residues within 4Å: Chain E: N.11 No protein-ligand interaction detected (PLIP) NAG.14: 3 residues within 4Å: Chain E: Q.15, K.22, N.23 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.22 Hydrogen bonds: E:Q.15 NAG.15: 3 residues within 4Å: Chain E: N.275, T.276, N.286 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, Y. et al., H5 avian and H9 swine influenza virus haemagglutinin structures: possible origin of influenza subtypes. EMBO J. (2002)

Release Date

2001-09-26

Peptides

HAEMAGGLUTININ (HA1 CHAIN): ACE
HAEMAGGLUTININ (HA2 CHAIN): BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HAEMAGGLUTININ (HA1 CHAIN)

HAEMAGGLUTININ (HA2 CHAIN)

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