SMTL ID : 1jso.2 (1 other biounit)

STRUCTURE OF AVIAN H5 HAEMAGGLUTININ BOUND TO LSTC RECEPTOR ANALOG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.165, N.236, D.237, A.238 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain C: N.165, N.236, D.237, A.238 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain D: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain E: N.165, N.236, D.237, A.238 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 3 residues within 4Å: Chain F: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.11 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: Q.15, K.22, N.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.22 Hydrogen bonds: A:Q.15 NAG.5: 2 residues within 4Å: Chain A: N.275, N.286 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain C: N.11 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain C: Q.15, K.22, N.23 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.22 Hydrogen bonds: C:Q.15 NAG.11: 2 residues within 4Å: Chain C: N.275, N.286 No protein-ligand interaction detected (PLIP) NAG.15: 1 residues within 4Å: Chain E: N.11 No protein-ligand interaction detected (PLIP) NAG.16: 3 residues within 4Å: Chain E: Q.15, K.22, N.23 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.22 Hydrogen bonds: E:Q.15 NAG.17: 2 residues within 4Å: Chain E: N.275, N.286 No protein-ligand interaction detected (PLIP)

3 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)

SIA.6: 12 residues within 4Å: Chain A: Y.91, S.129, V.131, S.132, S.133, W.149, I.151, H.179, E.186, K.189, L.190, Q.222 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.149, A:I.151, A:L.190 Hydrogen bonds: A:Y.91, A:V.131, A:S.133, A:H.179, A:K.189, A:Q.222, A:Q.222 SIA.12: 12 residues within 4Å: Chain C: Y.91, S.129, V.131, S.132, S.133, W.149, I.151, H.179, E.186, K.189, L.190, Q.222 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:W.149, C:I.151, C:L.190 Hydrogen bonds: C:Y.91, C:V.131, C:S.133, C:H.179, C:K.189, C:Q.222, C:Q.222 SIA.18: 12 residues within 4Å: Chain E: Y.91, S.129, V.131, S.132, S.133, W.149, I.151, H.179, E.186, K.189, L.190, Q.222 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:W.149, E:I.151, E:L.190 Hydrogen bonds: E:Y.91, E:V.131, E:S.133, E:H.179, E:K.189, E:Q.222, E:Q.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, Y. et al., X-ray structures of H5 avian and H9 swine influenza virus hemagglutinins bound to avian and human receptor analogs. Proc.Natl.Acad.Sci.USA (2001)

Release Date

2001-09-26

Peptides

HAEMAGGLUTININ (HA1 CHAIN): ACE
HAEMAGGLUTININ (HA2 CHAIN): BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HAEMAGGLUTININ (HA1 CHAIN)

HAEMAGGLUTININ (HA2 CHAIN)

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