SMTL ID : 1jtp.2 (1 other biounit)

Degenerate interfaces in antigen-antibody complexes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: D.99, S.100, T.101, G.119, D.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.99, A:S.100, A:T.101 NA.3: 6 residues within 4Å: Chain B: S.60, R.61, C.64, N.65, S.72, K.73 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.73 Water bridges: B:S.72

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 8 residues within 4Å: Chain A: A.6, Y.94, Y.95, C.96, G.124, Q.125, G.126, T.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.96, A:C.96, A:G.126 Water bridges: A:A.6, A:A.6 FMT.4: 8 residues within 4Å: Chain B: N.65, D.66, G.67, R.68, T.69, P.70, G.71, S.72 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.66, B:G.67, B:G.67, B:T.69, B:G.71, B:S.72, B:S.72 Water bridges: B:D.66 FMT.5: 3 residues within 4Å: Chain A: Y.118 Chain B: N.106, R.112 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.118, A:Y.118, B:R.112 Water bridges: A:T.101, A:T.101 FMT.6: 2 residues within 4Å: Chain B: R.5, C.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.5, B:R.5, B:C.6 Water bridges: B:E.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Decanniere, K. et al., Degenerate interfaces in antigen-antibody complexes. J.Mol.Biol. (2001)

Release Date

2001-12-05

Peptides

Single-Domain Antibody: A
LYSOZYME C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
M

Single-Domain Antibody

LYSOZYME C

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