SMTL ID : 1jyb.2 (1 other biounit)

Crystal structure of Rubrerythrin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

8 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.53, E.94, E.128, H.131 Ligands: ZN.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.53, A:E.94, A:E.94, A:E.128, A:H.131 FE.2: 4 residues within 4Å: Chain A: C.158, C.161, C.174, C.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.158, A:C.161, A:C.174, A:C.177 FE.4: 5 residues within 4Å: Chain B: E.53, E.94, E.128, H.131 Ligands: ZN.6 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.53, B:E.94, B:E.94, B:E.128, B:H.131 FE.5: 4 residues within 4Å: Chain B: C.158, C.161, C.174, C.177 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.158, B:C.161, B:C.174, B:C.177 FE.7: 5 residues within 4Å: Chain C: E.53, E.94, E.128, H.131 Ligands: ZN.9 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.53, C:E.94, C:E.94, C:E.128, C:H.131 FE.8: 4 residues within 4Å: Chain C: C.158, C.161, C.174, C.177 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.158, C:C.161, C:C.174, C:C.177 FE.10: 5 residues within 4Å: Chain D: E.53, E.94, E.128, H.131 Ligands: ZN.12 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.53, D:E.94, D:E.94, D:E.128, D:H.131 FE.11: 4 residues within 4Å: Chain D: C.158, C.161, C.174, C.177 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.158, D:C.161, D:C.174, D:C.177

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: E.20, E.53, E.97, E.128 Ligands: FE.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.20, A:E.20, A:E.53, A:E.97, A:E.128 ZN.6: 5 residues within 4Å: Chain B: E.20, E.53, E.97, E.128 Ligands: FE.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.20, B:E.20, B:E.53, B:E.97, B:E.128 ZN.9: 5 residues within 4Å: Chain C: E.20, E.53, E.97, E.128 Ligands: FE.7 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.20, C:E.20, C:E.53, C:E.97, C:E.128 ZN.12: 5 residues within 4Å: Chain D: E.20, E.53, E.97, E.128 Ligands: FE.10 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.20, D:E.20, D:E.53, D:E.97, D:E.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Crystal structure studies on rubrerythrin: enzymatic activity in relation to the zinc movement. J.Biol.Inorg.Chem. (2003)

Release Date

2002-09-11

Peptides

Rubrerythrin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Rubrerythrin

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