SMTL ID : 1lkm.1 (1 other biounit)

Crystal structure of Desulfovibrio vulgaris rubrerythrin all-iron(III) form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.53, E.94, E.128, H.131 Ligands: FE.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.53, A:E.94, A:E.128, A:H.131, H2O.9 FE.2: 5 residues within 4Å: Chain A: E.20, E.53, E.97, E.128 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.20, A:E.53, A:E.97, A:E.128, H2O.9 FE.3: 4 residues within 4Å: Chain A: C.158, C.161, C.174, C.177 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.158, A:C.161, A:C.174, A:C.177 FE.4: 5 residues within 4Å: Chain B: E.53, E.94, E.128, H.131 Ligands: FE.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.53, B:E.94, B:E.128, B:H.131, H2O.18 FE.5: 5 residues within 4Å: Chain B: E.20, E.53, E.97, E.128 Ligands: FE.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.20, B:E.53, B:E.97, B:E.128, H2O.18 FE.6: 4 residues within 4Å: Chain B: C.158, C.161, C.174, C.177 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.158, B:C.161, B:C.174, B:C.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, S. et al., X-ray Crystal Structures of Reduced Rubrerythrin and its Azide Adduct: A Structure-Based Mechanism for a Non-Heme DiIron Peroxidase. J.Am.Chem.Soc. (2002)

Release Date

2002-09-18

Peptides

Rubrerythrin all-iron(III) form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Rubrerythrin all-iron(III) form

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