SMTL ID : 1k28.1

The Structure of the Bacteriophage T4 Cell-Puncturing Device

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-3-3-mer

Ligands

3 x K: POTASSIUM ION(Non-covalent)

K.1: 5 residues within 4Å: Chain A: E.552 Chain C: E.552 Chain E: E.552 Ligands: K.3, K.5 No protein-ligand interaction detected (PLIP) K.3: 5 residues within 4Å: Chain A: E.552 Chain C: E.552 Chain E: E.552 Ligands: K.1, K.5 No protein-ligand interaction detected (PLIP) K.5: 5 residues within 4Å: Chain A: E.552 Chain C: E.552 Chain E: E.552 Ligands: K.1, K.3 No protein-ligand interaction detected (PLIP)

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: K.454 Chain C: K.454, Y.464 Chain E: K.454 Ligands: PO4.4, PO4.6 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E, 1 interactions with chain C Water bridges: A:T.456 Salt bridges: A:K.454, E:K.454, C:K.454 PO4.4: 6 residues within 4Å: Chain A: K.454 Chain C: K.454 Chain E: K.454, Y.464 Ligands: PO4.2, PO4.6 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E, 2 interactions with chain C Salt bridges: A:K.454, E:K.454, C:K.454 Water bridges: C:T.456 PO4.6: 6 residues within 4Å: Chain A: K.454, Y.464 Chain C: K.454 Chain E: K.454 Ligands: PO4.2, PO4.4 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain E, 1 interactions with chain C Salt bridges: A:K.454, E:K.454, C:K.454 Water bridges: E:T.456

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanamaru, S. et al., Structure of the cell-puncturing device of bacteriophage T4. Nature (2002)

Release Date

2002-02-06

Peptides

TAIL-ASSOCIATED LYSOZYME: ACE
BASEPLATE STRUCTURAL PROTEIN GP27: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
D

D
D

F
D

TAIL-ASSOCIATED LYSOZYME

BASEPLATE STRUCTURAL PROTEIN GP27

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