SMTL ID : 1kfv.1 (1 other biounit)

Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.245, C.248, C.265, C.268 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.245, C:C.248, C:C.265, C:C.268

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: T.9, T.10 Chain C: L.34, Y.58, H.72, R.74, T.113, E.115, Y.125, K.129 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.58, C:Y.58, C:R.74, C:T.113 Water bridges: C:K.129, C:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serre, L. et al., Crystal structure of the Lactococcus lactis formamidopyrimidine-DNA glycosylase bound to an abasic site analogue-containing DNA. EMBO J. (2002)

Release Date

2002-06-14

Peptides

Formamido-pyrimidine DNA glycosylase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Formamido-pyrimidine DNA glycosylase

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