SMTL ID : 1nnj.1

Crystal structure Complex between the Lactococcus lactis Fpg and an abasic site containing DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: T.6, T.8, T.9 Chain B: A.6, A.7 Chain C: G.259, R.260 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.259 Water bridges: C:K.256, C:R.260 GOL.3: 10 residues within 4Å: Chain A: T.9, T.10 Chain C: L.34, Y.58, H.72, R.74, T.113, E.115, Y.125, K.129 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.74, C:R.74, C:E.115, C:Y.125, C:K.129 Water bridges: C:R.74

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain C: C.245, C.248, C.265, C.268 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.245, C:C.248, C:C.265, C:C.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira de Jesus, K. et al., Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Nucleic Acids Res. (2005)

Release Date

2003-02-11

Peptides

Formamidopyrimidine-DNA glycosylase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Formamidopyrimidine-DNA glycosylase

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