SMTL ID : 1kg2.1

Crystal structure of the core fragment of MutY from E.coli at 1.2A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.69, L.70, H.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.70 Water bridges: A:Q.94, A:Q.94 SO4.2: 4 residues within 4Å: Chain A: R.19, Q.44, V.45, A.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.19, A:V.45 Water bridges: A:R.19

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 8 residues within 4Å: Chain A: R.147, C.192, P.197, C.199, C.202, Q.205, C.208, A.211 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.192, A:C.199, A:C.202, A:C.208

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: R.58, D.64, N.67, A.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.58, A:R.58 GOL.5: 3 residues within 4Å: Chain A: F.108, R.119, W.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.119, A:R.119 Water bridges: A:P.135 GOL.6: 8 residues within 4Å: Chain A: T.29, P.30, Y.31, T.61, V.62, G.102, K.103, F.104 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.29, A:Y.31, A:V.62, A:G.102, A:F.104 Water bridges: A:T.61, A:G.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gilboa, R. et al., Analysis of the E.coli MutY DNA glycosylase structure and function by site-directed mutagenesis. To be Published

Release Date

2002-11-26

Peptides

A/G-specific adenine glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A/G-specific adenine glycosylase

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