- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
MG.2: 1 residues within 4Å:- Ligands: ANP.3
No protein-ligand interaction detected (PLIP)MG.13: 1 residues within 4Å:- Ligands: ANP.14
No protein-ligand interaction detected (PLIP)MG.16: 1 residues within 4Å:- Ligands: ANP.17
No protein-ligand interaction detected (PLIP)MG.19: 1 residues within 4Å:- Ligands: ANP.20
No protein-ligand interaction detected (PLIP)- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.3: 19 residues within 4Å:- Chain A: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, I.95, H.113, G.114, A.115, F.125, S.173, M.174
- Ligands: SO4.1, MG.2, ARG.4, ASP.8
13 PLIP interactions:11 interactions with chain A, 2 Ligand-Ligand interactions- Hydrogen bonds: A:A.6, A:A.33, A:A.33, A:R.92, A:R.92, A:G.114, A:G.114, A:M.174, A:M.174, R.4, D.8
- Water bridges: A:Q.37
- Salt bridges: A:R.92
ANP.14: 19 residues within 4Å:- Chain B: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, I.95, H.113, G.114, A.115, F.125, S.173, M.174
- Ligands: ARG.5, ASP.9, SO4.12, MG.13
11 PLIP interactions:9 interactions with chain B, 2 Ligand-Ligand interactions- Hydrogen bonds: B:A.33, B:A.33, B:R.92, B:R.92, B:G.114, B:G.114, B:M.174, B:M.174, R.5, D.9
- Salt bridges: B:R.92
ANP.17: 20 residues within 4Å:- Chain C: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, I.95, H.113, G.114, A.115, F.125, S.173, M.174, D.175
- Ligands: ARG.6, ASP.10, SO4.15, MG.16
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:A.6, C:A.33, C:A.33, C:R.92, C:R.92, C:G.114, C:G.114, C:M.174, C:M.174
- Water bridges: C:D.12, C:D.12
- Salt bridges: C:R.92
ANP.20: 20 residues within 4Å:- Chain D: A.6, Y.7, T.13, F.31, T.32, A.33, Q.37, R.92, I.95, H.113, G.114, A.115, F.125, S.173, M.174, D.175
- Ligands: ARG.7, ASP.11, SO4.18, MG.19
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:A.6, D:A.33, D:A.33, D:R.92, D:R.92, D:G.114, D:G.114, D:M.174, D:M.174
- Water bridges: D:T.116
- Salt bridges: D:R.92
- 4 x ARG: ARGININE(Non-covalent)
ARG.4: 15 residues within 4Å:- Chain A: Y.84, T.88, S.89, N.120, R.124, S.173, M.174, D.175, S.182, Y.183, E.184, E.258, Y.270, Y.310
- Ligands: ANP.3
14 PLIP interactions:13 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:T.88
- Hydrogen bonds: A:Y.84, A:Y.84, A:S.89, A:N.120, A:S.173, A:M.174, A:E.184, A:E.258
- Water bridges: A:Y.183, A:Y.183, D.8
- Salt bridges: A:R.124, A:E.184
ARG.5: 15 residues within 4Å:- Chain B: Y.84, T.88, S.89, N.120, R.124, S.173, M.174, D.175, S.182, Y.183, E.184, E.258, Y.270, Y.310
- Ligands: ANP.14
15 PLIP interactions:13 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: B:T.88
- Hydrogen bonds: B:Y.84, B:Y.84, B:S.89, B:N.120, B:S.173, B:S.173, B:E.184, B:E.258, B:Y.270
- Water bridges: B:E.184, R.5, D.9
- Salt bridges: B:R.124, B:E.184
ARG.6: 15 residues within 4Å:- Chain C: Y.84, T.88, S.89, N.120, R.124, S.173, M.174, D.175, S.182, Y.183, E.184, E.258, Y.270, Y.310
- Ligands: ANP.17
16 PLIP interactions:14 interactions with chain C, 2 Ligand-Ligand interactions- Hydrophobic interactions: C:T.88
- Hydrogen bonds: C:Y.84, C:S.89, C:N.120, C:S.173, C:M.174, C:E.184, C:E.258, C:E.258, C:Y.310
- Water bridges: C:E.184, C:Y.270, R.6, D.10
- Salt bridges: C:R.124, C:E.184
ARG.7: 15 residues within 4Å:- Chain D: Y.84, T.88, S.89, N.120, R.124, S.173, M.174, D.175, S.182, Y.183, E.184, E.258, Y.270, Y.310
- Ligands: ANP.20
11 PLIP interactions:11 interactions with chain D,- Hydrogen bonds: D:T.88, D:S.89, D:N.120, D:S.173, D:S.173, D:E.184, D:E.258, D:Y.270, D:Y.310
- Salt bridges: D:R.124, D:E.184
- 4 x ASP: ASPARTIC ACID(Non-covalent)
ASP.8: 7 residues within 4Å:- Chain A: A.115, T.116, G.119, N.120, D.121, E.184
- Ligands: ANP.3
11 PLIP interactions:10 interactions with chain A, 1 Ligand-Ligand interactions- Hydrogen bonds: A:R.92, A:T.116, A:N.120, A:N.120, A:D.121, A:D.121
- Water bridges: A:T.116, A:G.119, A:G.119, A:R.260, R.4
ASP.9: 7 residues within 4Å:- Chain B: A.115, T.116, G.119, N.120, D.121, E.184
- Ligands: ANP.14
13 PLIP interactions:10 interactions with chain B, 3 Ligand-Ligand interactions- Hydrogen bonds: B:T.116, B:N.120, B:N.120, B:D.121, B:D.121
- Water bridges: B:T.116, B:G.119, B:G.119, B:R.260, R.5, D.9, D.9
- Salt bridges: B:R.260
ASP.10: 7 residues within 4Å:- Chain C: A.115, T.116, G.119, N.120, D.121, E.184
- Ligands: ANP.17
11 PLIP interactions:10 interactions with chain C, 1 Ligand-Ligand interactions- Hydrogen bonds: C:T.116, C:G.119, C:N.120, C:N.120, C:D.121
- Water bridges: C:T.116, C:T.116, C:Q.122, C:R.260, R.6
- Salt bridges: C:R.260
ASP.11: 7 residues within 4Å:- Chain D: A.115, T.116, G.119, N.120, D.121, E.184
- Ligands: ANP.20
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:T.116, D:N.120, D:N.120, D:D.121, D:D.121
- Water bridges: D:T.116, D:T.116, D:G.119, D:Q.122
- Salt bridges: D:R.260
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goto, M. et al., Structures of Argininosuccinate Synthetase in Enzyme-ATP Substrates and Enzyme-AMP Product Forms: STEREOCHEMISTRY OF THE CATALYTIC REACTION. J.Biol.Chem. (2003)
- Release Date
- 2003-04-22
- Peptides
- Argininosuccinate Synthetase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
- 4 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 4 x ARG: ARGININE(Non-covalent)
- 4 x ASP: ASPARTIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Goto, M. et al., Structures of Argininosuccinate Synthetase in Enzyme-ATP Substrates and Enzyme-AMP Product Forms: STEREOCHEMISTRY OF THE CATALYTIC REACTION. J.Biol.Chem. (2003)
- Release Date
- 2003-04-22
- Peptides
- Argininosuccinate Synthetase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D