SMTL ID : 1ki4.1

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH 5-BROMOTHIENYLDEOXYURIDINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: P.12, H.13, G.14, M.15, G.16, K.17, T.18, R.177 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.14, A:M.15, A:G.16, A:K.17, A:T.18 Water bridges: A:K.17, A:T.19, A:E.38, A:R.118 Salt bridges: A:K.17, A:K.174, A:R.177 SO4.3: 7 residues within 4Å: Chain B: H.13, G.14, M.15, G.16, K.17, T.18, R.177 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:G.14, B:M.15, B:G.16, B:K.17, B:T.18, B:R.177 Water bridges: B:K.17, B:K.17, B:E.38, B:R.118 Salt bridges: B:K.17

2 x BTD: 5-BROMOTHIENYLDEOXYURIDINE(Non-covalent)

BTD.2: 16 residues within 4Å: Chain A: H.13, E.38, W.43, I.52, I.55, Y.56, Q.80, M.83, Y.87, R.118, H.119, A.122, A.123, Y.127, R.177, E.180 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:H.13, A:W.43, A:W.43, A:Y.87, A:Y.127 Hydrogen bonds: A:H.13, A:E.38, A:Y.56, A:Q.80, A:Q.80, A:E.180 Water bridges: A:R.131, A:R.131, A:R.177 pi-Stacking: A:Y.127 pi-Cation interactions: A:R.118 Halogen bonds: A:H.119 BTD.4: 16 residues within 4Å: Chain B: H.13, E.38, W.43, I.52, I.55, Y.56, Q.80, M.83, Y.87, R.118, H.119, A.122, A.123, Y.127, R.177, E.180 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:H.13, B:W.43, B:Y.87 Hydrogen bonds: B:E.38, B:Q.80, B:Q.80, B:E.180 Water bridges: B:H.13, B:R.131, B:R.131, B:R.177 pi-Stacking: B:Y.127 pi-Cation interactions: B:R.118 Halogen bonds: B:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Champness, J.N. et al., Exploring the active site of herpes simplex virus type-1 thymidine kinase by X-ray crystallography of complexes with aciclovir and other ligands. Proteins (1998)

Release Date

1998-12-02

Peptides

THYMIDINE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

THYMIDINE KINASE

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