- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE2: FE (II) ION(Non-covalent)
- 8 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
BPY.2: 16 residues within 4Å:- Chain A: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.1, TBU.3
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:I.172, A:F.186, A:F.186, A:F.201, A:H.240, A:P.279
- pi-Stacking: A:H.209, A:H.240
BPY.5: 16 residues within 4Å:- Chain B: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.4, TBU.6
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:I.172, B:F.186, B:F.186, B:F.201, B:H.240, B:P.279
- pi-Stacking: B:H.209, B:H.240
BPY.8: 16 residues within 4Å:- Chain C: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.7, TBU.9
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:I.172, C:F.186, C:F.186, C:F.201, C:H.240, C:P.279
- pi-Stacking: C:H.209, C:H.240
BPY.11: 16 residues within 4Å:- Chain D: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.10, TBU.12
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:I.172, D:F.186, D:F.186, D:F.201, D:H.240, D:P.279
- pi-Stacking: D:H.209, D:H.240
BPY.14: 16 residues within 4Å:- Chain E: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.13, TBU.15
9 PLIP interactions:9 interactions with chain E- Hydrophobic interactions: E:I.172, E:F.186, E:F.186, E:F.201, E:H.240, E:P.279
- Hydrogen bonds: E:Y.249
- pi-Stacking: E:H.209, E:H.240
BPY.17: 16 residues within 4Å:- Chain F: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.16, TBU.18
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:I.172, F:F.186, F:F.186, F:F.201, F:H.240, F:P.279
- Hydrogen bonds: F:Y.249
- pi-Stacking: F:H.209, F:H.240
BPY.20: 16 residues within 4Å:- Chain G: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.19, TBU.21
9 PLIP interactions:9 interactions with chain G- Hydrophobic interactions: G:I.172, G:F.186, G:F.186, G:F.201, G:H.240, G:P.279
- Hydrogen bonds: G:Y.249
- pi-Stacking: G:H.209, G:H.240
BPY.23: 16 residues within 4Å:- Chain H: H.145, I.172, M.174, F.186, H.194, F.201, H.208, H.209, H.240, N.242, D.243, Y.249, E.259, P.279
- Ligands: FE2.22, TBU.24
9 PLIP interactions:9 interactions with chain H- Hydrophobic interactions: H:I.172, H:F.186, H:F.186, H:F.201, H:H.240, H:P.279
- Hydrogen bonds: H:Y.249
- pi-Stacking: H:H.209, H:H.240
- 8 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)
TBU.3: 5 residues within 4Å:- Chain A: S.235, S.280, H.284, R.288
- Ligands: BPY.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.235, A:R.288
TBU.6: 5 residues within 4Å:- Chain B: S.235, S.280, H.284, R.288
- Ligands: BPY.5
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.235, B:R.288
TBU.9: 5 residues within 4Å:- Chain C: S.235, S.280, H.284, R.288
- Ligands: BPY.8
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.235, C:R.288
TBU.12: 5 residues within 4Å:- Chain D: S.235, S.280, H.284, R.288
- Ligands: BPY.11
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.235, D:R.288
TBU.15: 5 residues within 4Å:- Chain E: S.235, S.280, H.284, R.288
- Ligands: BPY.14
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:S.235, E:R.288
TBU.18: 5 residues within 4Å:- Chain F: S.235, S.280, H.284, R.288
- Ligands: BPY.17
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:S.235, F:R.288
TBU.21: 5 residues within 4Å:- Chain G: S.235, S.280, H.284, R.288
- Ligands: BPY.20
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:S.235, G:R.288
TBU.24: 5 residues within 4Å:- Chain H: S.235, S.280, H.284, R.288
- Ligands: BPY.23
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:S.235, H:R.288
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vaillancourt, F.H. et al., Molecular basis for the stabilization and inhibition of 2, 3-dihydroxybiphenyl 1,2-dioxygenase by t-butanol. J.Biol.Chem. (1998)
- Release Date
- 2002-02-20
- Peptides
- 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x FE2: FE (II) ION(Non-covalent)
- 8 x BPY: BIPHENYL-2,3-DIOL(Non-covalent)
- 8 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vaillancourt, F.H. et al., Molecular basis for the stabilization and inhibition of 2, 3-dihydroxybiphenyl 1,2-dioxygenase by t-butanol. J.Biol.Chem. (1998)
- Release Date
- 2002-02-20
- Peptides
- 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A