SMTL ID : 1ksj.1

Complex of Arl2 and PDE delta, Crystal Form 2 (SeMet)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 12 residues within 4Å: Chain A: D.27, N.28, K.31, T.32, P.48, T.49, G.70, G.71, Q.72 Ligands: MG.2, GDP.4, GTP.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.28, A:T.49, A:G.71 Water bridges: A:K.31, A:Q.72, A:Q.72 Salt bridges: A:K.31

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: T.32, T.49, D.68 Ligands: PO4.1, GDP.4, GTP.5 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.32, A:T.49, H2O.1, H2O.1

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 8 residues within 4Å: Chain A: L.26, A.29, V.93, D.94, D.97, R.100, M.101, C.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.94 Water bridges: A:L.26

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.4: 19 residues within 4Å: Chain A: L.26, D.27, N.28, A.29, G.30, K.31, T.32, T.33, I.46, N.127, K.128, D.130, L.131, S.160, A.161, V.162 Ligands: PO4.1, MG.2, GTP.5 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:L.26, A:N.28, A:A.29, A:G.30, A:K.31, A:T.32, A:T.33, A:T.33, A:N.127, A:K.128, A:K.128, A:S.160, A:A.161, A:V.162 Water bridges: A:K.31, A:T.32, A:T.49 Salt bridges: A:K.31, A:D.130 pi-Cation interactions: A:K.128

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.5: 22 residues within 4Å: Chain A: D.27, N.28, A.29, G.30, K.31, T.32, T.33, I.46, P.48, T.49, G.70, G.71, N.127, K.128, D.130, L.131, S.160, A.161, V.162 Ligands: PO4.1, MG.2, GDP.4 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:N.28, A:A.29, A:G.30, A:K.31, A:T.32, A:T.33, A:T.33, A:T.49, A:G.71, A:N.127, A:K.128, A:K.128, A:A.161, A:V.162 Water bridges: A:K.31, A:T.32, A:T.32, A:Q.72, A:Q.72 Salt bridges: A:K.31, A:K.31, A:D.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanzal-Bayer, M. et al., The complex of Arl2-GTP and PDE delta: from structure to function. EMBO J. (2002)

Release Date

2002-05-08

Peptides

arf-like protein 2: A
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

arf-like protein 2

RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT

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