SMTL ID : 1kxg.1 (1 other biounit)

The 2.0 Ang Resolution Structure of BLyS, B Lymphocyte Stimulator.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 4 residues within 4Å: Chain A: Q.101 Chain B: Q.101 Chain C: Q.101 Ligands: MG.10 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: K.119 Ligands: CIT.4 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: R.81, K.119 Ligands: CIT.4 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Ligands: MG.1 No protein-ligand interaction detected (PLIP)

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 8 residues within 4Å: Chain A: R.81, K.83, H.85, F.87, E.90, E.121 Ligands: MG.2, MG.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.87, A:E.121 Hydrogen bonds: A:H.85 Water bridges: A:R.81, A:H.85, A:K.119 Salt bridges: A:R.81, A:K.83, A:K.83, A:H.85

13 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.5: 6 residues within 4Å: Chain A: I.25, K.27, F.32, N.50, K.51, Q.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.27 DIO.6: 9 residues within 4Å: Chain A: Q.101, S.111, C.112, Y.113 Chain B: S.111, C.112, Y.113 Chain C: S.111, Y.113 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.113, B:Y.113 DIO.7: 1 residues within 4Å: Chain C: P.104 No protein-ligand interaction detected (PLIP) DIO.8: 5 residues within 4Å: Chain A: T.24, A.135, Q.136, I.137, L.139 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.136, A:I.137 DIO.9: 5 residues within 4Å: Chain A: K.82, K.83, V.84, G.123, E.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.125 DIO.11: 6 residues within 4Å: Chain B: I.25, F.32, E.49, N.50, K.51, Q.127 No protein-ligand interaction detected (PLIP) DIO.12: 6 residues within 4Å: Chain B: G.76, H.77, R.98, C.99, I.100, P.131 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.98 DIO.13: 6 residues within 4Å: Chain A: F.61, L.149 Chain B: F.61 Chain C: F.61, L.149, L.151 No protein-ligand interaction detected (PLIP) DIO.14: 6 residues within 4Å: Chain C: G.76, H.77, L.78, R.98, C.99, P.131 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.98 DIO.15: 6 residues within 4Å: Chain C: I.25, K.27, F.32, N.50, K.51, Q.127 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.50, C:Q.127 DIO.16: 3 residues within 4Å: Chain A: R.41 Chain C: Y.59, K.119 No protein-ligand interaction detected (PLIP) DIO.17: 4 residues within 4Å: Chain C: T.24, A.135, Q.136, I.137 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.137 DIO.18: 1 residues within 4Å: Chain C: H.85 1 PLIP interactions: 1 interactions with chain C Water bridges: C:E.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oren, D.A. et al., Structural basis of BLyS receptor recognition. Nat.Struct.Biol. (2002)

Release Date

2002-03-20

Peptides

B lymphocyte stimulator: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

B lymphocyte stimulator

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