SMTL ID : 1kxg.2 (1 other biounit)

The 2.0 Ang Resolution Structure of BLyS, B Lymphocyte Stimulator.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.1: 1 residues within 4Å: Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.2: 4 residues within 4Å: Chain A: Q.101 Chain B: Q.101 Chain C: Q.101 Ligands: MG.1 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain C: R.81, K.119 Ligands: CIT.9 No protein-ligand interaction detected (PLIP)

7 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.3: 6 residues within 4Å: Chain A: K.27, F.32, E.49, N.50, K.51, Q.127 No protein-ligand interaction detected (PLIP) DIO.4: 8 residues within 4Å: Chain A: C.112, Y.113 Chain B: Q.101, S.111, Y.113 Chain C: S.111, C.112, Y.113 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Y.113, C:Y.113 DIO.5: 6 residues within 4Å: Chain A: F.61 Chain B: F.61, L.149, L.151 Chain C: F.61, L.149 No protein-ligand interaction detected (PLIP) DIO.6: 5 residues within 4Å: Chain B: I.25, F.32, N.50, K.51, Q.127 No protein-ligand interaction detected (PLIP) DIO.7: 4 residues within 4Å: Chain B: T.24, A.135, Q.136, I.137 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.136 DIO.10: 5 residues within 4Å: Chain C: I.25, F.32, N.50, K.51, Q.127 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.50 Water bridges: C:K.51 DIO.11: 3 residues within 4Å: Chain A: P.104 Chain B: P.104 Chain C: P.104 No protein-ligand interaction detected (PLIP)

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.9: 7 residues within 4Å: Chain C: R.81, K.83, H.85, F.87, E.90, E.121 Ligands: MG.8 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.87 Hydrogen bonds: C:H.85 Water bridges: C:R.81, C:K.119, C:E.121 Salt bridges: C:R.81, C:K.83, C:K.83, C:H.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oren, D.A. et al., Structural basis of BLyS receptor recognition. Nat.Struct.Biol. (2002)

Release Date

2002-03-20

Peptides

B lymphocyte stimulator: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

B lymphocyte stimulator

Related Entries With Identical Sequence