- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-9-9-mer
- Ligands
- 18 x RG1: Rhodopin b-D-glucoside(Non-covalent)
- 27 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
BCL.2: 23 residues within 4Å:- Chain A: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain B: F.22, L.25, A.26, A.29, H.30
- Chain K: W.7, V.10, A.18, L.19
- Ligands: RG1.1, BCL.5, BCL.28, RG1.29, BCL.30
16 PLIP interactions:10 interactions with chain A, 4 interactions with chain K, 2 interactions with chain B,- Hydrophobic interactions: A:L.20, A:L.20, A:I.34, A:W.40, A:F.41, A:F.41, A:F.41, A:Y.44, A:W.45, K:W.7, K:V.10, K:A.18, K:L.19, B:A.29
- Metal complexes: A:H.31
- Hydrogen bonds: B:H.30
BCL.3: 15 residues within 4Å:- Chain A: M.1, N.2, Q.3
- Chain B: I.16, T.19, R.20, L.27, H.30, W.39
- Chain C: L.20
- Chain D: G.18
- Ligands: RG1.4, BCL.5, BCL.7, RG1.9
4 PLIP interactions:4 interactions with chain B,- Hydrophobic interactions: B:R.20, B:L.27, B:W.39
- Hydrogen bonds: B:R.20
BCL.5: 23 residues within 4Å:- Chain A: V.23, A.27, V.30, H.31, I.34, W.40
- Chain B: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Chain C: Y.44, W.45
- Chain D: F.22, L.25
- Ligands: BCL.2, BCL.3, RG1.4, RG1.6, BCL.7, RG1.9
9 PLIP interactions:3 interactions with chain A, 5 interactions with chain B, 1 interactions with chain D,- Hydrophobic interactions: A:V.30, A:W.40, B:T.19, B:L.23, B:A.33, B:W.39, D:L.25
- Hydrogen bonds: A:H.31
- Metal complexes: B:H.30
BCL.7: 23 residues within 4Å:- Chain A: W.7, V.10, A.18, L.19
- Chain C: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain D: F.22, L.25, A.26, A.29, H.30
- Ligands: BCL.3, RG1.4, BCL.5, RG1.6, BCL.10
16 PLIP interactions:10 interactions with chain C, 4 interactions with chain A, 2 interactions with chain D,- Hydrophobic interactions: C:L.20, C:L.20, C:I.34, C:W.40, C:F.41, C:F.41, C:F.41, C:Y.44, C:W.45, A:W.7, A:V.10, A:A.18, A:L.19, D:A.29
- Metal complexes: C:H.31
- Hydrogen bonds: D:H.30
BCL.8: 15 residues within 4Å:- Chain C: M.1, N.2, Q.3
- Chain D: I.16, T.19, R.20, L.27, H.30, W.39
- Chain E: L.20
- Chain F: G.18
- Ligands: RG1.9, BCL.10, BCL.12, RG1.14
4 PLIP interactions:4 interactions with chain D,- Hydrophobic interactions: D:R.20, D:L.27, D:W.39
- Hydrogen bonds: D:R.20
BCL.10: 23 residues within 4Å:- Chain C: V.23, A.27, V.30, H.31, I.34, W.40
- Chain D: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Chain E: Y.44, W.45
- Chain F: F.22, L.25
- Ligands: BCL.7, BCL.8, RG1.9, RG1.11, BCL.12, RG1.14
9 PLIP interactions:3 interactions with chain C, 1 interactions with chain F, 5 interactions with chain D,- Hydrophobic interactions: C:V.30, C:W.40, F:L.25, D:T.19, D:L.23, D:A.33, D:W.39
- Hydrogen bonds: C:H.31
- Metal complexes: D:H.30
BCL.12: 23 residues within 4Å:- Chain C: W.7, V.10, A.18, L.19
- Chain E: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain F: F.22, L.25, A.26, A.29, H.30
- Ligands: BCL.8, RG1.9, BCL.10, RG1.11, BCL.15
16 PLIP interactions:4 interactions with chain C, 2 interactions with chain F, 10 interactions with chain E,- Hydrophobic interactions: C:W.7, C:V.10, C:A.18, C:L.19, F:A.29, E:L.20, E:L.20, E:I.34, E:W.40, E:F.41, E:F.41, E:F.41, E:Y.44, E:W.45
- Hydrogen bonds: F:H.30
- Metal complexes: E:H.31
BCL.13: 15 residues within 4Å:- Chain E: M.1, N.2, Q.3
- Chain F: I.16, T.19, R.20, L.27, H.30, W.39
- Chain M: L.20
- Chain N: G.18
- Ligands: RG1.14, BCL.15, BCL.32, RG1.34
4 PLIP interactions:4 interactions with chain F,- Hydrophobic interactions: F:R.20, F:L.27, F:W.39
- Hydrogen bonds: F:R.20
BCL.15: 23 residues within 4Å:- Chain E: V.23, A.27, V.30, H.31, I.34, W.40
- Chain F: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Chain M: Y.44, W.45
- Chain N: F.22, L.25
- Ligands: BCL.12, BCL.13, RG1.14, RG1.31, BCL.32, RG1.34
9 PLIP interactions:5 interactions with chain F, 3 interactions with chain E, 1 interactions with chain N,- Hydrophobic interactions: F:T.19, F:L.23, F:A.33, F:W.39, E:V.30, E:W.40, N:L.25
- Metal complexes: F:H.30
- Hydrogen bonds: E:H.31
BCL.17: 23 residues within 4Å:- Chain G: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain H: F.22, L.25, A.26, A.29, H.30
- Chain Q: W.7, V.10, A.18, L.19
- Ligands: RG1.16, BCL.20, BCL.43, RG1.44, BCL.45
16 PLIP interactions:10 interactions with chain G, 2 interactions with chain H, 4 interactions with chain Q,- Hydrophobic interactions: G:L.20, G:L.20, G:I.34, G:W.40, G:F.41, G:F.41, G:F.41, G:Y.44, G:W.45, H:A.29, Q:W.7, Q:V.10, Q:A.18, Q:L.19
- Metal complexes: G:H.31
- Hydrogen bonds: H:H.30
BCL.18: 15 residues within 4Å:- Chain G: M.1, N.2, Q.3
- Chain H: I.16, T.19, R.20, L.27, H.30, W.39
- Chain I: L.20
- Chain J: G.18
- Ligands: RG1.19, BCL.20, BCL.22, RG1.24
4 PLIP interactions:4 interactions with chain H,- Hydrophobic interactions: H:R.20, H:L.27, H:W.39
- Hydrogen bonds: H:R.20
BCL.20: 23 residues within 4Å:- Chain G: V.23, A.27, V.30, H.31, I.34, W.40
- Chain H: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Chain I: Y.44, W.45
- Chain J: F.22, L.25
- Ligands: BCL.17, BCL.18, RG1.19, RG1.21, BCL.22, RG1.24
9 PLIP interactions:3 interactions with chain G, 5 interactions with chain H, 1 interactions with chain J,- Hydrophobic interactions: G:V.30, G:W.40, H:T.19, H:L.23, H:A.33, H:W.39, J:L.25
- Hydrogen bonds: G:H.31
- Metal complexes: H:H.30
BCL.22: 23 residues within 4Å:- Chain G: W.7, V.10, A.18, L.19
- Chain I: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain J: F.22, L.25, A.26, A.29, H.30
- Ligands: BCL.18, RG1.19, BCL.20, RG1.21, BCL.25
16 PLIP interactions:2 interactions with chain J, 4 interactions with chain G, 10 interactions with chain I,- Hydrophobic interactions: J:A.29, G:W.7, G:V.10, G:A.18, G:L.19, I:L.20, I:L.20, I:I.34, I:W.40, I:F.41, I:F.41, I:F.41, I:Y.44, I:W.45
- Hydrogen bonds: J:H.30
- Metal complexes: I:H.31
BCL.23: 15 residues within 4Å:- Chain I: M.1, N.2, Q.3
- Chain J: I.16, T.19, R.20, L.27, H.30, W.39
- Chain K: L.20
- Chain L: G.18
- Ligands: RG1.24, BCL.25, BCL.27, RG1.29
4 PLIP interactions:4 interactions with chain J,- Hydrophobic interactions: J:R.20, J:L.27, J:W.39
- Hydrogen bonds: J:R.20
BCL.25: 23 residues within 4Å:- Chain I: V.23, A.27, V.30, H.31, I.34, W.40
- Chain J: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Chain K: Y.44, W.45
- Chain L: F.22, L.25
- Ligands: BCL.22, BCL.23, RG1.24, RG1.26, BCL.27, RG1.29
9 PLIP interactions:5 interactions with chain J, 3 interactions with chain I, 1 interactions with chain L,- Hydrophobic interactions: J:T.19, J:L.23, J:A.33, J:W.39, I:V.30, I:W.40, L:L.25
- Metal complexes: J:H.30
- Hydrogen bonds: I:H.31
BCL.27: 23 residues within 4Å:- Chain I: W.7, V.10, A.18, L.19
- Chain K: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain L: F.22, L.25, A.26, A.29, H.30
- Ligands: BCL.23, RG1.24, BCL.25, RG1.26, BCL.30
16 PLIP interactions:10 interactions with chain K, 4 interactions with chain I, 2 interactions with chain L,- Hydrophobic interactions: K:L.20, K:L.20, K:I.34, K:W.40, K:F.41, K:F.41, K:F.41, K:Y.44, K:W.45, I:W.7, I:V.10, I:A.18, I:L.19, L:A.29
- Metal complexes: K:H.31
- Hydrogen bonds: L:H.30
BCL.28: 15 residues within 4Å:- Chain A: L.20
- Chain B: G.18
- Chain K: M.1, N.2, Q.3
- Chain L: I.16, T.19, R.20, L.27, H.30, W.39
- Ligands: BCL.2, RG1.4, RG1.29, BCL.30
4 PLIP interactions:4 interactions with chain L,- Hydrophobic interactions: L:R.20, L:L.27, L:W.39
- Hydrogen bonds: L:R.20
BCL.30: 23 residues within 4Å:- Chain A: Y.44, W.45
- Chain B: F.22, L.25
- Chain K: V.23, A.27, V.30, H.31, I.34, W.40
- Chain L: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Ligands: RG1.1, BCL.2, RG1.4, BCL.27, BCL.28, RG1.29
9 PLIP interactions:3 interactions with chain K, 1 interactions with chain B, 5 interactions with chain L,- Hydrophobic interactions: K:V.30, K:W.40, B:L.25, L:T.19, L:L.23, L:A.33, L:W.39
- Hydrogen bonds: K:H.31
- Metal complexes: L:H.30
BCL.32: 23 residues within 4Å:- Chain E: W.7, V.10, A.18, L.19
- Chain M: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain N: F.22, L.25, A.26, A.29, H.30
- Ligands: BCL.13, RG1.14, BCL.15, RG1.31, BCL.35
16 PLIP interactions:4 interactions with chain E, 10 interactions with chain M, 2 interactions with chain N,- Hydrophobic interactions: E:W.7, E:V.10, E:A.18, E:L.19, M:L.20, M:L.20, M:I.34, M:W.40, M:F.41, M:F.41, M:F.41, M:Y.44, M:W.45, N:A.29
- Metal complexes: M:H.31
- Hydrogen bonds: N:H.30
BCL.33: 15 residues within 4Å:- Chain M: M.1, N.2, Q.3
- Chain N: I.16, T.19, R.20, L.27, H.30, W.39
- Chain O: L.20
- Chain P: G.18
- Ligands: RG1.34, BCL.35, BCL.37, RG1.39
4 PLIP interactions:4 interactions with chain N,- Hydrophobic interactions: N:R.20, N:L.27, N:W.39
- Hydrogen bonds: N:R.20
BCL.35: 23 residues within 4Å:- Chain M: V.23, A.27, V.30, H.31, I.34, W.40
- Chain N: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Chain O: Y.44, W.45
- Chain P: F.22, L.25
- Ligands: BCL.32, BCL.33, RG1.34, RG1.36, BCL.37, RG1.39
9 PLIP interactions:5 interactions with chain N, 3 interactions with chain M, 1 interactions with chain P,- Hydrophobic interactions: N:T.19, N:L.23, N:A.33, N:W.39, M:V.30, M:W.40, P:L.25
- Metal complexes: N:H.30
- Hydrogen bonds: M:H.31
BCL.37: 23 residues within 4Å:- Chain M: W.7, V.10, A.18, L.19
- Chain O: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain P: F.22, L.25, A.26, A.29, H.30
- Ligands: BCL.33, RG1.34, BCL.35, RG1.36, BCL.40
16 PLIP interactions:2 interactions with chain P, 4 interactions with chain M, 10 interactions with chain O,- Hydrophobic interactions: P:A.29, M:W.7, M:V.10, M:A.18, M:L.19, O:L.20, O:L.20, O:I.34, O:W.40, O:F.41, O:F.41, O:F.41, O:Y.44, O:W.45
- Hydrogen bonds: P:H.30
- Metal complexes: O:H.31
BCL.38: 15 residues within 4Å:- Chain O: M.1, N.2, Q.3
- Chain P: I.16, T.19, R.20, L.27, H.30, W.39
- Chain Q: L.20
- Chain R: G.18
- Ligands: RG1.39, BCL.40, BCL.42, RG1.44
4 PLIP interactions:4 interactions with chain P,- Hydrophobic interactions: P:R.20, P:L.27, P:W.39
- Hydrogen bonds: P:R.20
BCL.40: 23 residues within 4Å:- Chain O: V.23, A.27, V.30, H.31, I.34, W.40
- Chain P: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Chain Q: Y.44, W.45
- Chain R: F.22, L.25
- Ligands: BCL.37, BCL.38, RG1.39, RG1.41, BCL.42, RG1.44
9 PLIP interactions:5 interactions with chain P, 1 interactions with chain R, 3 interactions with chain O,- Hydrophobic interactions: P:T.19, P:L.23, P:A.33, P:W.39, R:L.25, O:V.30, O:W.40
- Metal complexes: P:H.30
- Hydrogen bonds: O:H.31
BCL.42: 23 residues within 4Å:- Chain O: W.7, V.10, A.18, L.19
- Chain Q: L.20, T.24, A.27, H.31, I.34, W.40, F.41, Y.44, W.45
- Chain R: F.22, L.25, A.26, A.29, H.30
- Ligands: BCL.38, RG1.39, BCL.40, RG1.41, BCL.45
16 PLIP interactions:4 interactions with chain O, 10 interactions with chain Q, 2 interactions with chain R,- Hydrophobic interactions: O:W.7, O:V.10, O:A.18, O:L.19, Q:L.20, Q:L.20, Q:I.34, Q:W.40, Q:F.41, Q:F.41, Q:F.41, Q:Y.44, Q:W.45, R:A.29
- Metal complexes: Q:H.31
- Hydrogen bonds: R:H.30
BCL.43: 15 residues within 4Å:- Chain G: L.20
- Chain H: G.18
- Chain Q: M.1, N.2, Q.3
- Chain R: I.16, T.19, R.20, L.27, H.30, W.39
- Ligands: BCL.17, RG1.19, RG1.44, BCL.45
4 PLIP interactions:4 interactions with chain R,- Hydrophobic interactions: R:R.20, R:L.27, R:W.39
- Hydrogen bonds: R:R.20
BCL.45: 23 residues within 4Å:- Chain G: Y.44, W.45
- Chain H: F.22, L.25
- Chain Q: V.23, A.27, V.30, H.31, I.34, W.40
- Chain R: T.19, F.22, L.23, A.26, H.30, A.33, W.39
- Ligands: RG1.16, BCL.17, RG1.19, BCL.42, BCL.43, RG1.44
9 PLIP interactions:5 interactions with chain R, 1 interactions with chain H, 3 interactions with chain Q,- Hydrophobic interactions: R:T.19, R:L.23, R:A.33, R:W.39, H:L.25, Q:V.30, Q:W.40
- Metal complexes: R:H.30
- Hydrogen bonds: Q:H.31
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prince, S.M. et al., Apoprotein structure in the LH2 complex from Rhodopseudomonas acidophila strain 10050: modular assembly and protein pigment interactions. J.Mol.Biol. (1997)
- Release Date
- 1997-04-01
- Peptides
- LIGHT HARVESTING PROTEIN B-800/850: ACEGIKMOQ
LIGHT HARVESTING PROTEIN B-800/850: BDFHJLNPR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
GG
AI
DK
GM
AO
DQ
GB
BD
EF
HH
BJ
EL
HN
BP
ER
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-9-9-mer
- Ligands
- 18 x RG1: Rhodopin b-D-glucoside(Non-covalent)
- 27 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prince, S.M. et al., Apoprotein structure in the LH2 complex from Rhodopseudomonas acidophila strain 10050: modular assembly and protein pigment interactions. J.Mol.Biol. (1997)
- Release Date
- 1997-04-01
- Peptides
- LIGHT HARVESTING PROTEIN B-800/850: ACEGIKMOQ
LIGHT HARVESTING PROTEIN B-800/850: BDFHJLNPR - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
GG
AI
DK
GM
AO
DQ
GB
BD
EF
HH
BJ
EL
HN
BP
ER
H - Membrane
-
We predict this structure to be a membrane protein.