SMTL ID : 1l2t.1 (1 other biounit)

Dimeric Structure of MJ0796, a Bacterial ABC Transporter Cassette

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: S.45, Q.90 Ligands: ATP.2 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.45, A:Q.90, B:G.148 Water bridges: A:Q.171 NA.4: 3 residues within 4Å: Chain B: S.45, Q.90 Ligands: ATP.5 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.45, B:Q.90, A:G.148

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 21 residues within 4Å: Chain A: Y.11, M.13, A.20, S.40, G.41, S.42, G.43, K.44, S.45, T.46, Q.90, H.204 Chain B: F.138, H.141, Q.145, S.147, G.148, G.149, Q.150, A.175 Ligands: NA.1 30 PLIP interactions: 19 interactions with chain A, 11 interactions with chain B Hydrogen bonds: A:G.41, A:G.41, A:G.43, A:G.43, A:K.44, A:S.45, A:T.46, A:Q.90, B:N.144, B:S.147, B:G.148, B:G.149, B:Q.150, B:Q.150, B:Q.150, B:A.175 Water bridges: A:S.45, A:S.45, A:S.45, A:Q.171, A:Q.171, A:Q.171, B:Q.145, B:Q.145, B:Q.145 Salt bridges: A:K.44, A:K.44, A:H.204 pi-Stacking: A:Y.11, A:Y.11 ATP.5: 22 residues within 4Å: Chain A: F.138, H.141, N.144, Q.145, S.147, G.148, G.149, Q.150, A.175 Chain B: Y.11, M.13, A.20, S.40, G.41, S.42, G.43, K.44, S.45, T.46, Q.90, H.204 Ligands: NA.4 29 PLIP interactions: 18 interactions with chain B, 11 interactions with chain A Hydrogen bonds: B:G.41, B:G.41, B:G.43, B:G.43, B:K.44, B:S.45, B:T.46, B:Q.90, B:Q.171, A:N.144, A:S.147, A:G.148, A:G.149, A:Q.150, A:Q.150, A:Q.150, A:A.175 Water bridges: B:S.45, B:S.45, B:S.45, B:H.204, A:Q.145, A:Q.145, A:A.175 Salt bridges: B:K.44, B:K.44, B:H.204 pi-Stacking: B:Y.11, B:Y.11

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 5 residues within 4Å: Chain A: S.178, G.181, E.182, D.205, V.208 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.173 IPA.6: 5 residues within 4Å: Chain B: S.178, G.181, E.182, D.205, V.208 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, P.C. et al., ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer. Mol.Cell (2002)

Release Date

2002-07-24

Peptides

Hypothetical ABC transporter ATP-binding protein MJ0796: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical ABC transporter ATP-binding protein MJ0796

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