SMTL ID : 1l2t.2 (1 other biounit)

Dimeric Structure of MJ0796, a Bacterial ABC Transporter Cassette

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: S.45, Q.90 Ligands: ATP.2 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.45, A:Q.90, B:G.148 Water bridges: A:Q.171 NA.4: 3 residues within 4Å: Chain B: S.45, Q.90 Ligands: ATP.5 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.45, B:Q.90, A:G.148 NA.7: 3 residues within 4Å: Chain C: S.45, Q.90 Ligands: ATP.8 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Q.90, D:G.148 Water bridges: C:Q.90, C:Q.171 NA.10: 3 residues within 4Å: Chain D: S.45, Q.90 Ligands: ATP.11 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.45, D:Q.90, C:G.148

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 21 residues within 4Å: Chain A: Y.11, M.13, A.20, S.40, G.41, S.42, G.43, K.44, S.45, T.46, Q.90, H.204 Chain B: F.138, H.141, Q.145, S.147, G.148, G.149, Q.150, A.175 Ligands: NA.1 30 PLIP interactions: 11 interactions with chain B, 19 interactions with chain A Hydrogen bonds: B:N.144, B:S.147, B:G.148, B:G.149, B:Q.150, B:Q.150, B:Q.150, B:A.175, A:G.41, A:G.41, A:G.43, A:G.43, A:K.44, A:S.45, A:T.46, A:Q.90 Water bridges: B:Q.145, B:Q.145, B:Q.145, A:S.45, A:S.45, A:S.45, A:Q.171, A:Q.171, A:Q.171 Salt bridges: A:K.44, A:K.44, A:H.204 pi-Stacking: A:Y.11, A:Y.11 ATP.5: 22 residues within 4Å: Chain A: F.138, H.141, N.144, Q.145, S.147, G.148, G.149, Q.150, A.175 Chain B: Y.11, M.13, A.20, S.40, G.41, S.42, G.43, K.44, S.45, T.46, Q.90, H.204 Ligands: NA.4 29 PLIP interactions: 11 interactions with chain A, 18 interactions with chain B Hydrogen bonds: A:N.144, A:S.147, A:G.148, A:G.149, A:Q.150, A:Q.150, A:Q.150, A:A.175, B:G.41, B:G.41, B:G.43, B:G.43, B:K.44, B:S.45, B:T.46, B:Q.90, B:Q.171 Water bridges: A:Q.145, A:Q.145, A:A.175, B:S.45, B:S.45, B:S.45, B:H.204 Salt bridges: B:K.44, B:K.44, B:H.204 pi-Stacking: B:Y.11, B:Y.11 ATP.8: 21 residues within 4Å: Chain C: Y.11, M.13, A.20, S.40, G.41, S.42, G.43, K.44, S.45, T.46, Q.90, H.204 Chain D: F.138, H.141, Q.145, S.147, G.148, G.149, Q.150, A.175 Ligands: NA.7 33 PLIP interactions: 21 interactions with chain C, 12 interactions with chain D Hydrogen bonds: C:G.41, C:G.41, C:G.43, C:G.43, C:K.44, C:S.45, C:T.46, C:T.46, C:Q.90, D:H.141, D:N.144, D:S.147, D:G.148, D:G.149, D:Q.150, D:Q.150, D:Q.150, D:A.175 Water bridges: C:Y.11, C:S.45, C:S.45, C:S.45, C:Q.171, C:Q.171, C:Q.171, D:Q.145, D:Q.145, D:Q.145 Salt bridges: C:K.44, C:K.44, C:H.204 pi-Stacking: C:Y.11, C:Y.11 ATP.11: 22 residues within 4Å: Chain C: F.138, H.141, N.144, Q.145, S.147, G.148, G.149, Q.150, A.175 Chain D: Y.11, M.13, A.20, S.40, G.41, S.42, G.43, K.44, S.45, T.46, Q.90, H.204 Ligands: NA.10 31 PLIP interactions: 20 interactions with chain D, 11 interactions with chain C Hydrogen bonds: D:G.41, D:G.41, D:G.43, D:G.43, D:K.44, D:S.45, D:T.46, D:T.46, D:Q.90, D:Q.171, C:N.144, C:S.147, C:G.148, C:G.149, C:Q.150, C:Q.150, C:Q.150, C:A.175 Water bridges: D:Y.11, D:S.45, D:S.45, D:S.45, D:H.204, C:Q.145, C:Q.145, C:A.175 Salt bridges: D:K.44, D:K.44, D:H.204 pi-Stacking: D:Y.11, D:Y.11

4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 5 residues within 4Å: Chain A: S.178, G.181, E.182, D.205, V.208 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.173 IPA.6: 5 residues within 4Å: Chain B: S.178, G.181, E.182, D.205, V.208 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.207 IPA.9: 5 residues within 4Å: Chain C: S.178, G.181, E.182, D.205, V.208 1 PLIP interactions: 1 interactions with chain C Water bridges: C:D.205 IPA.12: 5 residues within 4Å: Chain D: S.178, G.181, E.182, D.205, V.208 2 PLIP interactions: 2 interactions with chain D Water bridges: D:E.182, D:N.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, P.C. et al., ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer. Mol.Cell (2002)

Release Date

2002-07-24

Peptides

Hypothetical ABC transporter ATP-binding protein MJ0796: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Hypothetical ABC transporter ATP-binding protein MJ0796

Related Entries With Identical Sequence