- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 4 residues within 4Å:- Chain A: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.2
- Water bridges: A:N.154
NAG-NAG.12: 4 residues within 4Å:- Chain B: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.2
- Water bridges: B:N.154
NAG-NAG.22: 4 residues within 4Å:- Chain C: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.2
- Water bridges: C:N.154
NAG-NAG.32: 4 residues within 4Å:- Chain D: D.2, F.3, N.5, N.154
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.2
- Water bridges: D:N.154
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 2 residues within 4Å:- Chain A: N.65, W.357
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.65, A:W.357
NAG.13: 2 residues within 4Å:- Chain B: N.65, W.357
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.65, B:W.357
NAG.23: 2 residues within 4Å:- Chain C: N.65, W.357
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.65, C:W.357
NAG.33: 2 residues within 4Å:- Chain D: N.65, W.357
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.65, D:W.357
- 12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.4: 3 residues within 4Å:- Chain A: P.251, V.253, Y.260
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:Y.260, H2O.19
CA.5: 4 residues within 4Å:- Chain A: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.244, H2O.3, H2O.4
CA.6: 3 residues within 4Å:- Ligands: CA.16, CA.26, CA.36
No protein-ligand interaction detected (PLIP)CA.14: 3 residues within 4Å:- Chain B: P.251, V.253, Y.260
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:Y.260, H2O.41
CA.15: 4 residues within 4Å:- Chain B: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.244, H2O.25, H2O.26
CA.16: 3 residues within 4Å:- Ligands: CA.6, CA.26, CA.36
No protein-ligand interaction detected (PLIP)CA.24: 3 residues within 4Å:- Chain C: P.251, V.253, Y.260
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:Y.260, H2O.63
CA.25: 4 residues within 4Å:- Chain C: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.244, H2O.47, H2O.48
CA.26: 3 residues within 4Å:- Ligands: CA.6, CA.16, CA.36
No protein-ligand interaction detected (PLIP)CA.34: 3 residues within 4Å:- Chain D: P.251, V.253, Y.260
2 PLIP interactions:1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:Y.260, H2O.84
CA.35: 4 residues within 4Å:- Chain D: D.213, G.217, D.244, N.266
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.244, H2O.69, H2O.69
CA.36: 3 residues within 4Å:- Ligands: CA.6, CA.16, CA.26
No protein-ligand interaction detected (PLIP)- 4 x BCZ: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID(Non-covalent)
BCZ.7: 15 residues within 4Å:- Chain A: R.37, E.38, L.53, D.70, R.71, R.75, W.98, I.142, R.144, E.147, E.196, E.197, K.212, R.290, Y.324
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142, A:R.144, A:E.196
- Hydrogen bonds: A:D.70, A:R.71, A:R.75, A:W.98
- Water bridges: A:D.70, A:R.75, A:E.147, A:E.197, A:K.212, A:K.212, A:G.267
- Salt bridges: A:R.37, A:E.38, A:D.70, A:E.147, A:K.212, A:R.290
BCZ.17: 15 residues within 4Å:- Chain B: R.37, E.38, L.53, D.70, R.71, R.75, W.98, I.142, R.144, E.147, E.196, E.197, K.212, R.290, Y.324
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142, B:R.144, B:E.196
- Hydrogen bonds: B:D.70, B:R.71, B:R.75, B:W.98
- Water bridges: B:D.70, B:R.75, B:E.147, B:E.197, B:K.212, B:K.212, B:G.267
- Salt bridges: B:R.37, B:E.38, B:D.70, B:E.147, B:K.212, B:R.290
BCZ.27: 15 residues within 4Å:- Chain C: R.37, E.38, L.53, D.70, R.71, R.75, W.98, I.142, R.144, E.147, E.196, E.197, K.212, R.290, Y.324
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142, C:R.144, C:E.196
- Hydrogen bonds: C:D.70, C:R.71, C:R.75, C:W.98
- Water bridges: C:D.70, C:R.75, C:E.147, C:E.197, C:K.212, C:K.212, C:G.267
- Salt bridges: C:R.37, C:E.38, C:D.70, C:E.147, C:K.212, C:R.290
BCZ.37: 15 residues within 4Å:- Chain D: R.37, E.38, L.53, D.70, R.71, R.75, W.98, I.142, R.144, E.147, E.196, E.197, K.212, R.290, Y.324
21 PLIP interactions:21 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142, D:R.144, D:E.196
- Hydrogen bonds: D:D.70, D:R.71, D:R.75, D:W.98
- Water bridges: D:D.70, D:R.75, D:E.147, D:E.197, D:K.212, D:K.212, D:G.267
- Salt bridges: D:R.37, D:E.38, D:D.70, D:E.147, D:K.212, D:R.290
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.8: 5 residues within 4Å:- Chain A: K.255, C.256, N.257, D.258, D.305
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:C.256, A:N.257, A:N.257, A:D.305, A:D.305
GOL.9: 6 residues within 4Å:- Chain A: R.26
- Chain D: H.63, N.65, T.67, H.69, S.72
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:R.26, A:R.26, D:H.63
- Water bridges: D:H.63, D:S.72
GOL.10: 5 residues within 4Å:- Chain A: C.11, A.333, E.334, C.337, R.339
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.339
- Water bridges: A:E.336, A:R.339
GOL.18: 5 residues within 4Å:- Chain B: K.255, C.256, N.257, D.258, D.305
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:C.256, B:N.257, B:N.257, B:D.305, B:D.305
GOL.19: 6 residues within 4Å:- Chain B: R.26
- Chain C: H.63, N.65, T.67, H.69, S.72
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:H.63, B:R.26, B:R.26
- Water bridges: C:H.63, C:S.72
GOL.20: 5 residues within 4Å:- Chain B: C.11, A.333, E.334, C.337, R.339
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.339
- Water bridges: B:E.336, B:R.339
GOL.28: 5 residues within 4Å:- Chain C: K.255, C.256, N.257, D.258, D.305
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:C.256, C:N.257, C:N.257, C:D.305, C:D.305
GOL.29: 6 residues within 4Å:- Chain A: H.63, N.65, T.67, H.69, S.72
- Chain C: R.26
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:H.63, C:R.26, C:R.26
- Water bridges: A:H.63, A:S.72
GOL.30: 5 residues within 4Å:- Chain C: C.11, A.333, E.334, C.337, R.339
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.339
- Water bridges: C:E.336, C:R.339
GOL.38: 5 residues within 4Å:- Chain D: K.255, C.256, N.257, D.258, D.305
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:C.256, D:N.257, D:N.257, D:D.305, D:D.305
GOL.39: 6 residues within 4Å:- Chain B: H.63, N.65, T.67, H.69, S.72
- Chain D: R.26
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:H.63, D:R.26, D:R.26
- Water bridges: B:H.63, B:S.72
GOL.40: 5 residues within 4Å:- Chain D: C.11, A.333, E.334, C.337, R.339
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.339
- Water bridges: D:E.336, D:R.339
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Smith, B.J. et al., Structural studies of the resistance of influenza virus neuramindase to inhibitors. J.Med.Chem. (2002)
- Release Date
- 2002-05-29
- Peptides
- neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 4 x BCZ: 3-(1-ACETYLAMINO-2-ETHYL-BUTYL)-4-GUANIDINO-2-HYDROXY-CYCLOPENTANECARBOXYLIC ACID(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Smith, B.J. et al., Structural studies of the resistance of influenza virus neuramindase to inhibitors. J.Med.Chem. (2002)
- Release Date
- 2002-05-29
- Peptides
- neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A