SMTL ID : 1l8h.1

DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-12-mer

Ligands

12 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)

K.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) K.4: 1 residues within 4Å: Chain B: E.82 No protein-ligand interaction detected (PLIP) K.7: 4 residues within 4Å: Chain C: D.146 Chain F: D.146 Chain L: D.146 Ligands: TRS.8 No protein-ligand interaction detected (PLIP) K.9: 1 residues within 4Å: Chain D: E.82 No protein-ligand interaction detected (PLIP) K.13: 1 residues within 4Å: Chain E: E.82 No protein-ligand interaction detected (PLIP) K.15: 1 residues within 4Å: Chain G: E.82 No protein-ligand interaction detected (PLIP) K.16: 1 residues within 4Å: Chain G: R.153 No protein-ligand interaction detected (PLIP) K.17: 3 residues within 4Å: Chain D: D.146 Chain G: D.146 Chain J: D.146 No protein-ligand interaction detected (PLIP) K.19: 1 residues within 4Å: Chain H: E.82 No protein-ligand interaction detected (PLIP) K.20: 1 residues within 4Å: Chain J: E.82 No protein-ligand interaction detected (PLIP) K.22: 1 residues within 4Å: Chain K: E.82 No protein-ligand interaction detected (PLIP) K.24: 1 residues within 4Å: Chain L: E.82 No protein-ligand interaction detected (PLIP)

12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 3 residues within 4Å: Chain A: D.146 Chain E: D.146 Chain I: D.146 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:D.146 TRS.3: 4 residues within 4Å: Chain A: E.167 Chain H: E.167 Chain J: A.57, E.167 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain H Hydrogen bonds: J:E.167, H:E.167 TRS.5: 3 residues within 4Å: Chain B: D.146 Chain H: D.146 Chain K: D.146 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.146 TRS.6: 3 residues within 4Å: Chain B: E.167 Chain E: E.167 Chain L: E.167 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.167 TRS.8: 4 residues within 4Å: Chain C: D.146 Chain F: D.146 Chain L: D.146 Ligands: K.7 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:D.146 TRS.10: 3 residues within 4Å: Chain D: E.64 Chain F: E.64 Chain I: E.64 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain I Hydrogen bonds: F:E.64, I:E.64 TRS.11: 3 residues within 4Å: Chain D: E.167 Chain F: E.167 Chain I: E.167 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.167 TRS.12: 3 residues within 4Å: Chain D: D.146 Chain G: D.146 Chain J: D.146 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain D Hydrogen bonds: J:D.146 Water bridges: J:R.153, D:R.153 TRS.14: 3 residues within 4Å: Chain B: E.64 Chain E: E.64 Chain L: E.64 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain E Hydrogen bonds: B:E.64, E:E.64, E:E.64 TRS.18: 3 residues within 4Å: Chain C: E.167 Chain G: E.167 Chain K: E.167 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.167 TRS.21: 3 residues within 4Å: Chain A: E.64 Chain H: E.64 Chain J: E.64 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain J Hydrogen bonds: H:E.64, J:E.64 TRS.23: 3 residues within 4Å: Chain C: E.64 Chain G: E.64 Chain K: E.64 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain K Hydrogen bonds: C:E.64, K:E.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, J. et al., DNA Protection and Binding by E. Coli Dps Protein. To be Published

Release Date

2003-06-24

Peptides

DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA PROTECTION DURING STARVATION PROTEIN

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