SMTL ID : 1l8i.1

Dna Protection and Binding by E. Coli DPS Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-12-mer

Ligands

12 x K: POTASSIUM ION(Non-covalent)

K.1: 1 residues within 4Å: Chain A: E.82 No protein-ligand interaction detected (PLIP) K.5: 1 residues within 4Å: Chain B: E.82 No protein-ligand interaction detected (PLIP) K.8: 1 residues within 4Å: Chain C: E.82 No protein-ligand interaction detected (PLIP) K.12: 1 residues within 4Å: Chain D: E.82 No protein-ligand interaction detected (PLIP) K.15: 3 residues within 4Å: Chain E: E.82, Q.86 Chain I: K.157 No protein-ligand interaction detected (PLIP) K.16: 2 residues within 4Å: Chain E: T.79, E.82 No protein-ligand interaction detected (PLIP) K.17: 1 residues within 4Å: Chain F: E.82 No protein-ligand interaction detected (PLIP) K.18: 1 residues within 4Å: Chain G: E.82 No protein-ligand interaction detected (PLIP) K.20: 1 residues within 4Å: Chain H: E.82 No protein-ligand interaction detected (PLIP) K.21: 1 residues within 4Å: Chain I: E.82 No protein-ligand interaction detected (PLIP) K.22: 1 residues within 4Å: Chain J: E.82 No protein-ligand interaction detected (PLIP) K.23: 1 residues within 4Å: Chain L: E.82 No protein-ligand interaction detected (PLIP)

12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 3 residues within 4Å: Chain A: D.146 Chain E: D.146 Chain I: D.146 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:D.146 TRS.3: 3 residues within 4Å: Chain A: E.64 Chain H: E.64 Chain J: E.64 No protein-ligand interaction detected (PLIP) TRS.4: 6 residues within 4Å: Chain A: A.57, E.167 Chain H: A.57, E.167 Chain J: A.57, E.167 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain J, 1 interactions with chain H Hydrogen bonds: A:E.167, J:E.167, J:E.167, H:E.167 TRS.6: 3 residues within 4Å: Chain B: E.64 Chain E: E.64 Chain L: E.64 3 PLIP interactions: 1 interactions with chain L, 2 interactions with chain B Hydrogen bonds: L:E.64 Water bridges: B:E.64, B:E.64 TRS.7: 3 residues within 4Å: Chain B: D.146 Chain H: D.146 Chain K: D.146 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain H Hydrogen bonds: B:D.146, H:R.153 TRS.9: 3 residues within 4Å: Chain C: E.64 Chain G: E.64 Chain K: E.64 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.64 TRS.10: 6 residues within 4Å: Chain C: A.57, E.167 Chain G: A.57, E.167 Chain K: A.57, E.167 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain G, 2 interactions with chain C Hydrogen bonds: K:E.167, G:E.167, C:E.167, C:E.167 TRS.11: 3 residues within 4Å: Chain C: D.146 Chain F: D.146 Chain L: D.146 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:D.146 TRS.13: 3 residues within 4Å: Chain D: E.64 Chain F: E.64 Chain I: E.64 No protein-ligand interaction detected (PLIP) TRS.14: 6 residues within 4Å: Chain D: A.57, E.167 Chain F: A.57, E.167 Chain I: A.57, E.167 4 PLIP interactions: 1 interactions with chain I, 1 interactions with chain F, 2 interactions with chain D Hydrogen bonds: I:E.167, F:E.167, D:E.167, D:E.167 TRS.19: 4 residues within 4Å: Chain D: D.146 Chain G: D.146 Chain J: D.146, R.153 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:D.146, J:R.153 TRS.24: 5 residues within 4Å: Chain B: A.57, E.167 Chain E: A.57, E.167 Chain L: E.167 4 PLIP interactions: 1 interactions with chain L, 1 interactions with chain E, 2 interactions with chain B Hydrogen bonds: L:E.167, E:E.167, B:E.167, B:E.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, J. et al., DNA Protection and Binding by E. Coli Dps Protein. To be Published

Release Date

2003-06-24

Peptides

DNA PROTECTION DURING STARVATION PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA PROTECTION DURING STARVATION PROTEIN

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