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SMTL ID : 1lc7.1
Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica complexed with a substrate
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.1:
9 residues within 4Å:
Chain A:
G.84
,
E.85
,
T.86
,
S.213
,
T.215
,
K.216
,
R.224
,
L.225
Chain B:
Y.56
12
PLIP interactions
:
10 interactions with chain A
,
2 interactions with chain B
Hydrogen bonds:
A:E.85
,
A:T.86
,
A:T.86
,
A:T.86
,
A:S.213
,
A:T.215
,
A:L.225
,
B:Y.56
,
B:Y.56
Water bridges:
A:K.216
Salt bridges:
A:K.216
,
A:R.224
PO4.3:
9 residues within 4Å:
Chain A:
Y.56
Chain B:
G.84
,
E.85
,
T.86
,
S.213
,
T.215
,
K.216
,
R.224
,
L.225
9
PLIP interactions
:
8 interactions with chain B
,
1 interactions with chain A
Hydrogen bonds:
B:E.85
,
B:T.86
,
B:T.86
,
B:S.213
,
B:L.225
,
A:Y.56
Water bridges:
B:K.216
Salt bridges:
B:K.216
,
B:R.224
2 x
TPO
:
PHOSPHOTHREONINE
(Non-functional Binders)
TPO.2:
14 residues within 4Å:
Chain A:
A.7
,
H.8
,
G.9
,
A.31
,
N.32
,
F.108
,
N.157
,
F.188
,
K.216
,
R.323
,
Y.328
,
R.337
Chain B:
Y.56
,
W.246
15
PLIP interactions
:
13 interactions with chain A
,
2 interactions with chain B
Hydrogen bonds:
A:G.9
,
A:N.32
,
A:N.32
,
A:N.157
,
A:N.157
,
A:K.216
,
A:Y.328
Water bridges:
A:R.323
Salt bridges:
A:H.8
,
A:K.216
,
A:R.323
,
A:R.337
,
A:R.337
Hydrophobic interactions:
B:Y.56
,
B:W.246
TPO.4:
14 residues within 4Å:
Chain A:
Y.56
,
W.246
Chain B:
A.7
,
H.8
,
G.9
,
A.31
,
N.32
,
F.108
,
N.157
,
F.188
,
K.216
,
R.323
,
Y.328
,
R.337
15
PLIP interactions
:
13 interactions with chain B
,
2 interactions with chain A
Hydrogen bonds:
B:G.9
,
B:N.32
,
B:N.32
,
B:N.157
,
B:N.157
,
B:K.216
,
B:Y.328
Water bridges:
B:R.323
Salt bridges:
B:H.8
,
B:K.216
,
B:R.323
,
B:R.337
,
B:R.337
Hydrophobic interactions:
A:Y.56
,
A:W.246
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Cheong, C.G. et al., Structural studies of the L-threonine-O-3-phosphate decarboxylase (CobD) enzyme from Salmonella enterica: the apo, substrate, and product-aldimine complexes. Biochemistry (2002)
Release Date
2002-06-28
Peptides
L-Threonine-O-3-Phosphate Decarboxylase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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L-Threonine-O-3-Phosphate Decarboxylase
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