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SMTL ID : 1lc8.1
Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica complexed with its reaction intermediate
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
homo-dimer
Ligands
2 x
33P
:
{3-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-PROPYL}-PHOSPHONIC ACID
(Non-covalent)
33P.1:
23 residues within 4Å:
Chain A:
H.8
,
G.9
,
G.84
,
E.85
,
T.86
,
I.89
,
F.108
,
Y.111
,
C.153
,
N.157
,
D.185
,
A.187
,
F.188
,
S.213
,
T.215
,
K.216
,
R.224
,
L.225
,
R.323
,
Y.328
,
R.337
Chain B:
Y.56
,
W.246
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:N.157
Hydrogen bonds:
A:G.9
,
A:E.85
,
A:T.86
,
A:N.157
,
A:S.213
,
A:T.215
,
A:K.216
,
A:Y.328
Water bridges:
A:N.32
Salt bridges:
A:H.8
,
A:K.216
,
A:R.224
,
A:R.323
,
A:R.337
pi-Stacking:
A:F.108
33P.2:
23 residues within 4Å:
Chain A:
Y.56
,
W.246
Chain B:
H.8
,
G.9
,
G.84
,
E.85
,
T.86
,
I.89
,
F.108
,
Y.111
,
C.153
,
N.157
,
D.185
,
A.187
,
F.188
,
S.213
,
T.215
,
K.216
,
R.224
,
L.225
,
R.323
,
Y.328
,
R.337
20
PLIP interactions
:
19 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:N.157
Hydrogen bonds:
B:G.9
,
B:E.85
,
B:T.86
,
B:T.86
,
B:N.157
,
B:S.213
,
B:T.215
,
B:T.215
,
B:K.216
,
B:Y.328
,
B:Y.328
,
A:Y.56
Water bridges:
B:N.32
Salt bridges:
B:H.8
,
B:K.216
,
B:R.224
,
B:R.323
,
B:R.337
pi-Stacking:
B:F.108
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Cheong, C.G. et al., Structural studies of the L-threonine-O-3-phosphate decarboxylase (CobD) enzyme from Salmonella enterica: the apo, substrate, and product-aldimine complexes. Biochemistry (2002)
Release Date
2002-06-28
Peptides
L-Threonine-O-3-Phosphate Decarboxylase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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L-Threonine-O-3-Phosphate Decarboxylase
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