SMTL ID : 1lc8.1

Crystal Structure of L-Threonine-O-3-phosphate Decarboxylase from S. enterica complexed with its reaction intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x 33P: {3-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-PROPYL}-PHOSPHONIC ACID(Non-covalent)

33P.1: 23 residues within 4Å: Chain A: H.8, G.9, G.84, E.85, T.86, I.89, F.108, Y.111, C.153, N.157, D.185, A.187, F.188, S.213, T.215, K.216, R.224, L.225, R.323, Y.328, R.337 Chain B: Y.56, W.246 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:N.157 Hydrogen bonds: A:G.9, A:E.85, A:T.86, A:N.157, A:S.213, A:T.215, A:K.216, A:Y.328 Water bridges: A:N.32 Salt bridges: A:H.8, A:K.216, A:R.224, A:R.323, A:R.337 pi-Stacking: A:F.108 33P.2: 23 residues within 4Å: Chain A: Y.56, W.246 Chain B: H.8, G.9, G.84, E.85, T.86, I.89, F.108, Y.111, C.153, N.157, D.185, A.187, F.188, S.213, T.215, K.216, R.224, L.225, R.323, Y.328, R.337 20 PLIP interactions: 19 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:N.157 Hydrogen bonds: B:G.9, B:E.85, B:T.86, B:T.86, B:N.157, B:S.213, B:T.215, B:T.215, B:K.216, B:Y.328, B:Y.328, A:Y.56 Water bridges: B:N.32 Salt bridges: B:H.8, B:K.216, B:R.224, B:R.323, B:R.337 pi-Stacking: B:F.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheong, C.G. et al., Structural studies of the L-threonine-O-3-phosphate decarboxylase (CobD) enzyme from Salmonella enterica: the apo, substrate, and product-aldimine complexes. Biochemistry (2002)

Release Date

2002-06-28

Peptides

L-Threonine-O-3-Phosphate Decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

L-Threonine-O-3-Phosphate Decarboxylase

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