SMTL ID : 1llp.1

LIGNIN PEROXIDASE (ISOZYME H2) PI 4.15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: G.256, N.257, K.260 No protein-ligand interaction detected (PLIP)

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 5 residues within 4Å: Chain A: G.231, S.334, V.335, A.336, R.337 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.337 Water bridges: A:P.216, A:P.216, A:G.231, A:V.335, A:A.336

1 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Post Translational Modification)

A2G.3: 4 residues within 4Å: Chain A: C.249, C.317, E.319, T.320 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.319 Water bridges: A:Q.252

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: D.48, G.66, D.68, S.70 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.48, A:D.68, A:S.70, H2O.13, H2O.13 CA.5: 5 residues within 4Å: Chain A: S.177, D.194, T.196, I.199, D.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.194, A:D.194, A:T.196, A:I.199, A:D.201

1 x OH: HYDROXIDE ION(Non-covalent)

OH.6: 5 residues within 4Å: Chain A: W.171, M.172, D.264, F.265, I.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.264

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.7: 24 residues within 4Å: Chain A: H.39, E.40, I.42, R.43, F.46, I.85, P.145, E.146, P.147, I.154, M.172, L.173, A.175, H.176, V.178, A.179, A.180, V.181, N.182, D.183, V.184, F.193, I.235, T.237 27 PLIP interactions: 26 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:R.43, A:F.46, A:F.46, A:F.46, A:F.46, A:P.145, A:P.147, A:I.154, A:M.172, A:L.173, A:A.175, A:A.179, A:V.181, A:V.184, A:F.193, A:I.235 Hydrogen bonds: A:H.39, A:I.85, A:A.180, A:N.182, A:N.182, A:D.183, A:V.184 Salt bridges: A:R.43 pi-Stacking: A:F.193 Metal complexes: A:H.176, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choinowski, T. et al., The crystal structure of lignin peroxidase at 1.70 A resolution reveals a hydroxy group on the cbeta of tryptophan 171: a novel radical site formed during the redox cycle. J.Mol.Biol. (1999)

Release Date

1996-03-08

Peptides

LIGNIN PEROXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIGNIN PEROXIDASE

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