SMTL ID : 1lqt.1 (1 other biounit)

A covalent modification of NADP+ revealed by the atomic resolution structure of FprA, a Mycobacterium tuberculosis oxidoreductase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: R.110, M.111, L.112, N.113, R.199, V.322 Ligands: ODP.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.322 Hydrogen bonds: A:M.111, A:N.113, A:R.199 Water bridges: A:R.110, A:R.110, A:R.199 Salt bridges: A:R.110 ACT.2: 5 residues within 4Å: Chain A: D.56, H.57, R.164, E.214 Ligands: ACT.3 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.164 ACT.3: 6 residues within 4Å: Chain A: D.56, H.57, P.58, K.59, I.60 Ligands: ACT.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.57, A:K.59 Hydrogen bonds: A:K.59, A:E.214 Water bridges: A:K.59, A:I.60 Salt bridges: A:K.59 ACT.4: 10 residues within 4Å: Chain A: F.16, P.45, W.46, E.68, A.71, F.76, F.78, S.420, W.423, Q.424 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.45, A:F.78 Hydrogen bonds: A:W.423 Water bridges: A:E.72, A:S.420, A:Q.424 ACT.5: 6 residues within 4Å: Chain A: R.199, S.274, N.292, A.304, K.305, D.306 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.304 Hydrogen bonds: A:D.306 Water bridges: A:A.304

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.6: 39 residues within 4Å: Chain A: V.9, G.10, S.11, G.12, P.13, S.14, A.15, L.39, E.40, M.41, L.42, G.47, L.48, G.52, V.53, A.54, H.57, I.60, V.82, V.83, V.84, A.103, V.104, G.105, A.106, Q.107, V.129, V.158, D.161, Y.324, V.357, G.358, W.359, I.360, G.366, V.367, I.368, N.371 Ligands: ODP.7 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:L.48, A:V.129, A:V.158, A:Y.324, A:W.359, A:W.359 Hydrogen bonds: A:S.11, A:G.12, A:S.14, A:S.14, A:S.14, A:L.39, A:E.40, A:E.40, A:M.41, A:G.47, A:L.48, A:H.57, A:V.84, A:V.84, A:Q.107, A:W.359, A:W.359, A:I.368, A:N.371 Water bridges: A:A.15, A:A.106, A:I.360, A:G.369

1 x ODP: 4-OXO-NICOTINAMIDE-ADENINE DINUCLEOTIDE PHOSPHATE(Non-covalent)

ODP.7: 30 residues within 4Å: Chain A: H.57, R.110, L.112, I.153, G.154, N.155, G.156, N.157, V.158, A.159, D.161, R.199, R.200, Q.204, A.206, T.208, E.211, P.275, R.301, S.321, V.322, G.323, Y.324, W.359, P.364, T.365, G.366, V.367 Ligands: ACT.1, FAD.6 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:V.158 Hydrogen bonds: A:H.57, A:R.110, A:N.155, A:N.157, A:V.158, A:Q.204, A:E.211, A:E.211, A:G.366 Water bridges: A:G.154, A:G.156, A:G.156, A:N.157, A:N.157, A:R.199, A:R.199, A:R.199, A:R.199, A:R.200, A:R.200, A:R.200, A:A.206, A:T.208, A:T.208, A:R.301, A:R.301, A:S.321, A:S.321, A:Y.324 Salt bridges: A:R.199, A:R.200 pi-Cation interactions: A:R.199, A:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bossi, R.T. et al., A covalent modification of NADP+ revealed by the atomic resolution structure of FprA, a Mycobacterium tuberculosis oxidoreductase. Biochemistry (2002)

Release Date

2002-07-31

Peptides

FprA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FprA

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