SMTL ID : 1lqt.2 (1 other biounit)

A covalent modification of NADP+ revealed by the atomic resolution structure of FprA, a Mycobacterium tuberculosis oxidoreductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: A.148, R.149, Q.192, E.193, R.266 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.148, A:Q.192 Water bridges: A:R.149 Salt bridges: A:R.149 ACT.2: 4 residues within 4Å: Chain A: A.421, H.422, V.425, G.454 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.421 Water bridges: A:H.422 Salt bridges: A:H.422 ACT.3: 5 residues within 4Å: Chain A: R.2, D.31, L.32, D.33, K.390 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.31 Hydrogen bonds: A:R.2, A:D.33, A:D.33 ACT.4: 10 residues within 4Å: Chain A: F.16, P.45, W.46, E.68, A.71, F.76, F.78, S.420, W.423, Q.424 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.71 Water bridges: A:S.420, A:Q.424 ACT.5: 7 residues within 4Å: Chain A: R.110, M.111, L.112, N.113, R.199, V.322 Ligands: ODP.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.322 Hydrogen bonds: A:N.113 Water bridges: A:R.199 Salt bridges: A:R.110 ACT.6: 6 residues within 4Å: Chain A: G.156, N.157, A.206, T.365, G.366 Ligands: ODP.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.206 Water bridges: A:A.206

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.7: 39 residues within 4Å: Chain A: V.9, G.10, S.11, G.12, P.13, S.14, A.15, L.39, E.40, M.41, L.42, G.47, L.48, G.52, V.53, A.54, H.57, I.60, V.82, V.83, V.84, A.103, V.104, G.105, A.106, Q.107, V.129, V.158, D.161, Y.324, V.357, G.358, W.359, I.360, G.366, V.367, I.368, N.371 Ligands: ODP.8 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.48, A:V.129, A:V.158, A:Y.324, A:W.359, A:W.359 Hydrogen bonds: A:S.11, A:G.12, A:S.14, A:S.14, A:S.14, A:L.39, A:E.40, A:E.40, A:M.41, A:G.47, A:L.48, A:H.57, A:V.84, A:V.84, A:Q.107, A:W.359, A:W.359, A:I.368, A:N.371 Water bridges: A:A.15, A:G.105, A:G.369

1 x ODP: 4-OXO-NICOTINAMIDE-ADENINE DINUCLEOTIDE PHOSPHATE(Non-covalent)

ODP.8: 31 residues within 4Å: Chain A: H.57, R.110, L.112, I.153, G.154, N.155, G.156, N.157, V.158, A.159, D.161, R.199, R.200, Q.204, A.206, T.208, E.211, P.275, R.301, S.321, V.322, G.323, Y.324, W.359, P.364, T.365, G.366, V.367 Ligands: ACT.5, ACT.6, FAD.7 33 PLIP interactions: 33 interactions with chain A Hydrogen bonds: A:H.57, A:R.110, A:N.155, A:N.157, A:V.158, A:Q.204, A:E.211, A:G.366 Water bridges: A:G.154, A:G.156, A:G.156, A:N.157, A:N.157, A:R.199, A:R.199, A:R.199, A:R.199, A:R.199, A:R.200, A:R.200, A:A.206, A:T.208, A:T.208, A:R.301, A:R.301, A:R.301, A:S.321, A:G.323, A:Y.324 Salt bridges: A:R.199, A:R.200 pi-Cation interactions: A:R.199, A:R.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bossi, R.T. et al., A covalent modification of NADP+ revealed by the atomic resolution structure of FprA, a Mycobacterium tuberculosis oxidoreductase. Biochemistry (2002)

Release Date

2002-07-31

Peptides

FprA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

FprA

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