- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CD: CADMIUM ION(Non-covalent)
- 2 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
PEP.2: 11 residues within 4Å:- Chain A: C.11, K.46, D.81, P.101, A.102, K.124, R.154, E.222, D.233
- Ligands: CD.1, A5P.3
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:A.102, A:R.154
- Water bridges: A:K.41, A:K.41, A:S.43, A:N.48, A:F.103, A:K.124
- Salt bridges: A:K.41, A:K.46, A:K.124, A:K.124, A:R.154
PEP.8: 11 residues within 4Å:- Chain C: C.11, K.46, D.81, P.101, A.102, K.124, R.154, E.222, D.233
- Ligands: CD.7, A5P.9
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:A.102, C:R.154
- Water bridges: C:K.41, C:K.41, C:S.43, C:N.48, C:F.103, C:K.124
- Salt bridges: C:K.41, C:K.46, C:K.124, C:K.124, C:R.154
- 2 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
A5P.3: 11 residues within 4Å:- Chain A: K.46, N.48, R.49, S.50, R.154, Q.188, K.196, S.197, D.233
- Ligands: CD.1, PEP.2
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:K.46, A:K.46, A:N.48, A:S.50, A:S.50, A:R.154, A:Q.188, A:S.197, A:D.233
- Water bridges: A:S.51, A:S.54, A:Q.127, A:Q.127
- Salt bridges: A:R.49
A5P.9: 11 residues within 4Å:- Chain C: K.46, N.48, R.49, S.50, R.154, Q.188, K.196, S.197, D.233
- Ligands: CD.7, PEP.8
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:K.46, C:K.46, C:N.48, C:S.50, C:S.50, C:R.154, C:Q.188, C:S.197, C:D.233
- Water bridges: C:S.51, C:S.54, C:Q.127, C:Q.127
- Salt bridges: C:R.49
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 4 residues within 4Å:- Chain B: P.101, A.102, K.124, R.154
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:A.102
- Water bridges: B:K.46, B:K.46, B:N.48, B:N.48, B:D.81, B:F.103, B:K.124
- Salt bridges: B:K.124, B:R.154
PO4.5: 3 residues within 4Å:- Chain A: R.106
- Chain B: R.49, S.50
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.50
- Water bridges: B:S.51, B:S.54
- Salt bridges: B:R.49, A:R.106
PO4.10: 4 residues within 4Å:- Chain D: P.101, A.102, K.124, R.154
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:A.102
- Water bridges: D:K.46, D:K.46, D:N.48, D:N.48, D:D.81, D:F.103, D:K.124
- Salt bridges: D:K.124, D:R.154
PO4.11: 3 residues within 4Å:- Chain C: R.106
- Chain D: R.49, S.50
5 PLIP interactions:1 interactions with chain C, 4 interactions with chain D- Salt bridges: C:R.106, D:R.49
- Hydrogen bonds: D:S.50
- Water bridges: D:S.51, D:S.54
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, J. et al., Function of His185 in Aquifex aeolicus 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-11-27
- Peptides
- KDO-8-phosphate synthetase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CD: CADMIUM ION(Non-covalent)
- 2 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)
- 2 x A5P: ARABINOSE-5-PHOSPHATE(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, J. et al., Function of His185 in Aquifex aeolicus 3-Deoxy-D-manno-octulosonate 8-Phosphate Synthase. J.Mol.Biol. (2002)
- Release Date
- 2002-11-27
- Peptides
- KDO-8-phosphate synthetase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B