SMTL ID : 1ltx.1

Structure of Rab Escort Protein-1 in complex with Rab geranylgeranyl transferase and isoprenoid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ALA- ALA- ALA- ALA: AAAA(Non-covalent)

ALA-ALA-ALA-ALA.1: 8 residues within 4Å: Chain A: Y.107, F.143 Chain B: H.190, Y.241, D.287, F.289, H.290 Ligands: FAR.4 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.289, A:Y.107, A:F.143 Hydrogen bonds: B:Y.241 Salt bridges: B:H.190

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain B: D.238, C.240, H.290 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.238, B:D.238, B:C.240, B:H.290

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain C: L.232, Y.234, G.580, N.581 Ligand excluded by PLIP

1 x FAR: FARNESYL(Non-covalent)

FAR.4: 13 residues within 4Å: Chain A: Y.107 Chain B: Y.51, L.99, Q.103, R.144, F.147, Y.195, C.196, W.244, C.314 Ligands: ALA-ALA-ALA-ALA.1, ALA-ALA-ALA-ALA.1, ALA-ALA-ALA-ALA.1 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.51, B:L.99, B:F.147, B:Y.195, B:W.244, B:W.244, A:Y.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pylypenko, O. et al., Structure of Rab Escort Protein-1 in Complex with Rab Geranylgeranyltransferase. Mol.Cell (2003)

Release Date

2003-05-21

Peptides

RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT: A
RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT: B
Rab Escort Protein 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
R

RAB GERANYLGERANYLTRANSFERASE ALPHA SUBUNIT

RAB GERANYLGERANYLTRANSFERASE BETA SUBUNIT

Rab Escort Protein 1

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