SMTL ID : 1m1q.1

P222 oxidized structure of the tetraheme cytochrome c from Shewanella oneidensis MR1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.97 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.79, D.80, D.81, R.83 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.80, A:D.80, A:D.80, A:D.81 Water bridges: A:R.83, A:R.83, A:R.83 Salt bridges: A:R.83 SO4.2: 3 residues within 4Å: Chain A: S.25, A.26, D.27 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.25, A:A.26, A:D.27 Water bridges: A:G.28, A:A.29

4 x HEC: HEME C(Covalent)

HEC.3: 15 residues within 4Å: Chain A: S.6, H.9, A.10, G.14, C.15, C.18, H.19, P.24, S.25, G.28, E.31, A.59, V.64, H.65 Ligands: HEC.5 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:P.24, A:P.24, A:E.31, A:A.59, A:V.64 Hydrogen bonds: A:S.25 Water bridges: A:A.26, A:D.27 Salt bridges: A:H.19 Metal complexes: A:H.19, A:H.65 HEC.4: 16 residues within 4Å: Chain A: V.48, P.51, H.52, N.55, L.56, C.61, P.73, T.74, C.75, S.77, C.78, H.79, R.83, T.84, V.88 Ligands: HEC.6 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:V.48, A:P.51, A:P.51, A:L.56, A:V.88 Water bridges: A:R.83, A:R.83, A:R.83, A:R.83, A:R.83 Salt bridges: A:H.79, A:H.79, A:R.83 pi-Stacking: A:H.52, A:H.79, A:H.79 pi-Cation interactions: A:R.83 Metal complexes: A:H.52, A:H.79 HEC.5: 12 residues within 4Å: Chain A: L.5, F.8, H.9, S.17, Q.34, C.35, C.38, H.39, C.58, H.62 Ligands: HEC.3, HEC.6 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:L.5, A:L.5, A:F.8, A:H.62 Metal complexes: A:H.9, A:H.39 HEC.6: 19 residues within 4Å: Chain A: H.39, G.40, L.42, M.45, D.46, V.48, H.49, H.52, L.56, V.57, C.58, C.61, H.62, K.72, P.73, S.85, L.89 Ligands: HEC.4, HEC.5 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:H.39, A:L.42, A:K.72, A:P.73 Salt bridges: A:H.49 Metal complexes: A:H.49, A:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leys, D. et al., Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c. J.Biol.Chem. (2002)

Release Date

2002-08-14

Peptides

small tetraheme cytochrome c: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

small tetraheme cytochrome c

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