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SMTL ID : 1m4n.1
CRYSTAL STRUCTURE OF APPLE ACC SYNTHASE IN COMPLEX WITH [2-(AMINO-OXY)ETHYL](5'-DEOXYADENOSIN-5'-YL)(METHYL)SULFONIUM
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.01 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Non-covalent)
PLP.1:
14 residues within 4Å:
Chain A:
G.119
,
A.120
,
T.121
,
Y.145
,
T.198
,
N.202
,
D.230
,
I.232
,
Y.233
,
S.270
,
S.272
,
K.273
,
R.281
Ligands:
AAD.2
15
PLIP interactions
:
14 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:Y.145
,
A:Y.145
,
A:T.198
,
A:I.232
,
A:I.232
Hydrogen bonds:
A:A.120
,
A:T.121
,
A:T.121
,
A:N.202
,
A:S.270
,
A:S.272
Water bridges:
A:N.124
,
A:S.272
,
B:Q.83
Salt bridges:
A:R.281
PLP.4:
14 residues within 4Å:
Chain B:
G.119
,
A.120
,
T.121
,
Y.145
,
T.198
,
N.202
,
D.230
,
I.232
,
Y.233
,
S.270
,
S.272
,
K.273
,
R.281
Ligands:
AAD.5
15
PLIP interactions
:
14 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:Y.145
,
B:Y.145
,
B:T.198
,
B:I.232
,
B:I.232
Hydrogen bonds:
B:A.120
,
B:T.121
,
B:N.202
,
B:Y.233
,
B:S.270
,
B:S.272
Water bridges:
B:N.124
,
B:S.272
,
A:Q.83
Salt bridges:
B:R.281
2 x
AAD
:
(2-AMINOOXY-ETHYL)-[5-(6-AMINO-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHYL]-METHYL-SULFONIUM
(Non-covalent)
AAD.2:
13 residues within 4Å:
Chain A:
E.47
,
T.121
,
Y.145
,
G.147
,
R.150
,
D.151
,
K.273
Chain B:
Q.83
,
D.84
,
Y.85
,
S.301
Ligands:
PLP.1
,
MES.3
13
PLIP interactions
:
6 interactions with chain A
,
7 interactions with chain B
Hydrogen bonds:
A:Y.145
,
A:D.151
,
A:K.273
,
B:D.84
,
B:Y.85
Water bridges:
A:R.150
,
A:D.151
,
A:D.151
,
B:Q.83
,
B:Q.83
,
B:Y.85
,
B:S.301
pi-Stacking:
B:Y.85
AAD.5:
13 residues within 4Å:
Chain A:
Q.83
,
D.84
,
Y.85
,
S.301
Chain B:
E.47
,
T.121
,
Y.145
,
G.147
,
R.150
,
D.151
,
K.273
Ligands:
PLP.4
,
MES.6
15
PLIP interactions
:
5 interactions with chain B
,
10 interactions with chain A
Hydrogen bonds:
B:D.151
,
B:K.273
,
A:D.84
,
A:D.84
,
A:Y.85
Water bridges:
B:Y.145
,
B:R.150
,
B:D.151
,
A:Q.83
,
A:Q.83
,
A:H.86
,
A:H.86
,
A:S.301
,
A:S.301
pi-Stacking:
A:Y.85
2 x
MES
:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
(Non-covalent)
MES.3:
9 residues within 4Å:
Chain A:
G.44
,
L.45
,
A.46
,
E.47
,
Y.145
,
N.202
,
K.273
,
R.407
Ligands:
AAD.2
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:A.46
,
A:E.47
,
A:N.202
Salt bridges:
A:K.273
,
A:R.407
MES.6:
9 residues within 4Å:
Chain B:
G.44
,
L.45
,
A.46
,
E.47
,
Y.145
,
N.202
,
K.273
,
R.407
Ligands:
AAD.5
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:A.46
,
B:N.202
Salt bridges:
B:K.273
,
B:R.407
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Capitani, G. et al., Structure of 1-aminocyclopropane-1-carboxylate synthase in complex with an amino-oxy analogue of the substrate: implications for substrate binding. BIOCHEM.BIOPHYS.ACTA PROTEINS & PROTEOMICS (2003)
Release Date
2003-04-22
Peptides
1-aminocyclopropane-1-carboxylate synthase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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1-aminocyclopropane-1-carboxylate synthase
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