SMTL ID : 1m5v.2 (1 other biounit)

Transition State Stabilization by a Catalytic RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x G- U- C- C- U- C- U- C- C: RNA INHIBITOR SUBSTRATE(Non-functional Binders)

G-U-C-C-U-C-U-C-C.1: 17 residues within 4Å: Chain A: A.12 Chain B: G.1, G.2, A.3, G.4, A.5, G.6, A.7, G.8, A.9, A.24, C.25, A.26, C.27, G.55, A.57 Ligands: CA.4 No protein-ligand interaction detected (PLIP)

21 x CA: CALCIUM ION(Non-functional Binders)

CA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.3: 2 residues within 4Å: Chain A: A.12 Chain B: A.7 No protein-ligand interaction detected (PLIP) CA.4: 3 residues within 4Å: Chain B: G.55 Ligands: G-U-C-C-U-C-U-C-C.1, G-U-C-C-U-C-U-C-C.1 No protein-ligand interaction detected (PLIP) CA.5: 3 residues within 4Å: Chain B: A.22, A.59, U.60 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain B: U.38, G.39 No protein-ligand interaction detected (PLIP) CA.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.8: 1 residues within 4Å: Chain B: A.5 No protein-ligand interaction detected (PLIP) CA.9: 2 residues within 4Å: Chain B: U.43, C.44 No protein-ligand interaction detected (PLIP) CA.10: 1 residues within 4Å: Chain B: A.59 No protein-ligand interaction detected (PLIP) CA.11: 1 residues within 4Å: Chain B: G.1 No protein-ligand interaction detected (PLIP) CA.12: 2 residues within 4Å: Chain B: G.47, G.48 No protein-ligand interaction detected (PLIP) CA.13: 1 residues within 4Å: Chain B: U.37 No protein-ligand interaction detected (PLIP) CA.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.15: 1 residues within 4Å: Chain B: G.48 No protein-ligand interaction detected (PLIP) CA.16: 2 residues within 4Å: Chain B: G.47, G.48 No protein-ligand interaction detected (PLIP) CA.17: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.18: 1 residues within 4Å: Ligands: CA.21 No protein-ligand interaction detected (PLIP) CA.19: 1 residues within 4Å: Chain B: C.44 No protein-ligand interaction detected (PLIP) CA.20: 1 residues within 4Å: Chain B: U.56 No protein-ligand interaction detected (PLIP) CA.21: 2 residues within 4Å: Chain B: G.2 Ligands: CA.18 No protein-ligand interaction detected (PLIP) CA.22: 2 residues within 4Å: Chain B: G.19, A.20 No protein-ligand interaction detected (PLIP)

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.23: 5 residues within 4Å: Chain C: S.29, I.33, P.76, F.77, Y.78 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:I.33, C:F.77 Hydrogen bonds: C:Y.78 Water bridges: C:D.79, C:D.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rupert, P.B. et al., Transition state stabilization by a catalytic RNA. Science (2002)

Release Date

2002-10-12

Peptides

U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
F

U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A

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