- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x AV2: ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE(Non-covalent)
AV2.4: 12 residues within 4Å:- Chain A: L.33, S.34, A.35, S.36, G.37, K.38, S.39, T.40, R.148, N.184, L.187, V.189
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:A.35, A:S.36, A:G.37, A:K.38, A:S.39, A:T.40, A:T.40, A:R.148, A:N.184, A:L.187
- Water bridges: A:K.38, A:K.38, A:E.186, A:L.187
- Salt bridges: A:K.38
- pi-Cation interactions: A:R.148, A:R.148
AV2.14: 12 residues within 4Å:- Chain D: L.33, S.34, A.35, S.36, G.37, K.38, S.39, T.40, R.148, N.184, L.187, V.189
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:A.35, D:S.36, D:G.37, D:K.38, D:S.39, D:T.40, D:T.40, D:R.148, D:N.184, D:L.187
- Water bridges: D:K.38, D:K.38
- Salt bridges: D:K.38
- pi-Cation interactions: D:R.148, D:R.148
- 4 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)
ADX.5: 16 residues within 4Å:- Chain A: S.34, R.66, F.75, R.80, N.83, I.84, F.105, I.106, S.107, P.108, L.153, I.162, K.163, E.164, F.165, T.166
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:R.80, A:R.80, A:N.83, A:I.106, A:S.107, A:E.164, A:T.166
- Water bridges: A:S.34, A:S.34
- Salt bridges: A:R.66, A:R.66, A:R.80
- pi-Stacking: A:F.75, A:F.165
ADX.7: 17 residues within 4Å:- Chain B: S.34, R.66, F.75, R.80, N.83, I.84, F.105, I.106, S.107, P.108, L.153, I.162, K.163, E.164, F.165, T.166
- Ligands: ADP.6
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:R.80, B:R.80, B:N.83, B:I.106, B:S.107, B:E.164, B:T.166, B:T.166
- Water bridges: B:K.151
- Salt bridges: B:R.66, B:R.66, B:R.80
- pi-Stacking: B:F.75, B:F.75
ADX.10: 17 residues within 4Å:- Chain C: S.34, R.66, F.75, R.80, N.83, I.84, F.105, I.106, S.107, P.108, K.151, L.153, I.162, K.163, E.164, F.165, T.166
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:R.80, C:R.80, C:N.83, C:I.106, C:S.107, C:K.151, C:K.151, C:E.164, C:T.166
- Salt bridges: C:R.66, C:R.66, C:R.80
- pi-Stacking: C:F.75, C:F.75
ADX.15: 16 residues within 4Å:- Chain D: S.34, R.66, F.75, R.80, N.83, I.84, F.105, I.106, S.107, P.108, L.153, I.162, K.163, E.164, F.165, T.166
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:R.80, D:R.80, D:N.83, D:I.106, D:S.107, D:E.164, D:T.166, D:T.166
- Water bridges: D:S.34, D:S.34
- Salt bridges: D:R.66, D:R.66, D:R.80
- pi-Stacking: D:F.75, D:F.165
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.6: 14 residues within 4Å:- Chain B: L.33, S.34, A.35, S.36, G.37, K.38, S.39, T.40, R.148, P.150, N.184, L.187
- Chain C: E.186
- Ligands: ADX.7
19 PLIP interactions:17 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:A.35, B:S.36, B:G.37, B:K.38, B:S.39, B:T.40, B:T.40, B:L.187
- Water bridges: B:K.38, B:K.38, B:K.38, B:N.184, B:N.184, B:N.184, C:E.186, C:E.186
- Salt bridges: B:K.38
- pi-Cation interactions: B:R.148, B:R.148
ADP.9: 14 residues within 4Å:- Chain B: E.186
- Chain C: L.33, S.34, A.35, S.36, G.37, K.38, S.39, T.40, R.148, P.150, N.184, L.187, V.189
19 PLIP interactions:1 interactions with chain B, 18 interactions with chain C- Water bridges: B:E.186, C:K.38, C:K.38, C:K.151, C:K.151, C:N.184, C:N.184, C:N.184, C:L.187
- Hydrogen bonds: C:A.35, C:S.36, C:G.37, C:K.38, C:S.39, C:T.40, C:T.40, C:L.187
- Salt bridges: C:K.38
- pi-Cation interactions: C:R.148
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.11: 3 residues within 4Å:- Chain C: P.188, V.189, Q.190
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:V.189, C:Q.190
GOL.16: 7 residues within 4Å:- Chain A: S.2, T.3
- Chain D: F.7, R.21, P.132, K.203, Y.205
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:R.21, D:R.21, A:T.3, A:T.3
- Water bridges: D:F.7, D:H.8
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lansdon, E.B. et al., Ligand-Induced Structural Changes in Adenosine 5'-Phosphosulfate Kinase from Penicillium chrysogenum. Biochemistry (2002)
- Release Date
- 2002-11-27
- Peptides
- Adenylylsulfate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x AV2: ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE(Non-covalent)
- 4 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lansdon, E.B. et al., Ligand-Induced Structural Changes in Adenosine 5'-Phosphosulfate Kinase from Penicillium chrysogenum. Biochemistry (2002)
- Release Date
- 2002-11-27
- Peptides
- Adenylylsulfate kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
BD
C