SMTL ID : 1m7h.2 (3 other biounits)

Crystal Structure of APS kinase from Penicillium Chrysogenum: Structure with APS soaked out of one dimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.80, F.105, I.106 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.80, A:I.106 Water bridges: A:N.83, A:S.104, A:S.107 SO4.2: 4 residues within 4Å: Chain A: F.7, H.8, A.9, S.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.7, A:A.9, A:S.10 SO4.3: 5 residues within 4Å: Chain A: R.110, A.174, P.175, A.176, N.177 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.176, A:N.177, A:N.177 Water bridges: A:R.113, A:E.135, A:E.135 Salt bridges: A:R.110 SO4.4: 2 residues within 4Å: Chain A: S.76, E.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.77 Water bridges: A:A.78 SO4.6: 4 residues within 4Å: Chain B: F.7, H.8, A.9, S.10 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.7, B:A.9, B:S.10, B:S.10

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 12 residues within 4Å: Chain A: L.33, S.34, A.35, S.36, G.37, K.38, S.39, T.40, R.148, N.184, L.187, V.189 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:A.35, A:S.36, A:G.37, A:K.38, A:S.39, A:T.40, A:T.40, A:R.148, A:N.184, A:L.187 Water bridges: A:K.38, A:K.38, A:K.151, A:K.151, A:L.187 Salt bridges: A:K.38 pi-Cation interactions: A:R.148, A:R.148 ADP.7: 12 residues within 4Å: Chain B: L.33, S.34, A.35, S.36, G.37, K.38, S.39, T.40, R.148, P.150, N.184, L.187 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:A.35, B:S.36, B:G.37, B:K.38, B:S.39, B:T.40, B:T.40, B:R.148, B:N.184, B:L.187 Water bridges: B:K.38, B:K.38, B:S.104, B:L.187, B:L.187 Salt bridges: B:K.38 pi-Cation interactions: B:R.148

1 x ADX: ADENOSINE-5'-PHOSPHOSULFATE(Non-covalent)

ADX.8: 16 residues within 4Å: Chain B: S.34, R.66, F.75, R.80, N.83, I.84, F.105, I.106, S.107, P.108, L.153, I.162, K.163, E.164, F.165, T.166 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.80, B:R.80, B:N.83, B:I.106, B:S.107, B:E.164, B:T.166 Water bridges: B:S.34 Salt bridges: B:R.66, B:R.66, B:R.80 pi-Stacking: B:F.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lansdon, E.B. et al., Ligand-Induced Structural Changes in Adenosine 5'-Phosphosulfate Kinase from Penicillium chrysogenum. Biochemistry (2002)

Release Date

2002-11-27

Peptides

Adenylylsulfate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Adenylylsulfate kinase

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