SMTL ID : 1mcd.1

PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION

Oligo State

homo-dimer

Ligands

1 x ACE- DPN- BAL- HIS- DPR- NH2: PEPTIDE N-ACETYL-D-PHE-B-ALA-L-HIS-D-PRO-NH2(Non-covalent)

ACE-DPN-BAL-HIS-DPR-NH2.1: 11 residues within 4Å: Chain A: S.36, Y.38, Y.93, D.97, F.99 Chain B: Y.34, S.36, Y.51, E.52, Y.93, F.99 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.34, B:Y.34, B:Y.51, B:Y.93, B:F.99, A:Y.93, A:F.99 Hydrogen bonds: B:Y.34, B:Y.38, B:Y.38, B:Y.93, A:Y.38, A:D.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edmundson, A.B. et al., Principles and pitfalls in designing site-directed peptide ligands. Proteins (1993)

Release Date

1994-01-31

Peptides

Immunoglobulin lambda-1 light chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin lambda-1 light chain

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