SMTL ID : 1mch.1

PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

1 x ACE- GLN- PHE- HIS- PRO- BAL- BAL: PEPTIDE N-ACETYL-L-GLN-D-PHE-L-HIS-D-PRO-B-ALA-B-ALA-OH(Non-covalent)

ACE-GLN-PHE-HIS-PRO-BAL-BAL.1: 18 residues within 4Å: Chain A: Y.34, S.36, Y.38, E.52, D.97, F.99, F.101 Chain B: Y.34, S.36, Y.38, V.48, Y.51, E.52, S.91, S.92, Y.93, F.99, F.101 18 PLIP interactions: 8 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:Y.38, A:F.99, A:F.99, A:F.99, A:F.99, B:Y.34, B:Y.38, B:V.48, B:Y.51, B:F.99, B:F.101, B:F.101 Hydrogen bonds: A:S.36, A:D.97, B:S.36, B:S.91, B:S.91 pi-Stacking: A:Y.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edmundson, A.B. et al., Principles and pitfalls in designing site-directed peptide ligands. Proteins (1993)

Release Date

1994-01-31

Peptides

IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IMMUNOGLOBULIN LAMBDA DIMER MCG (LIGHT CHAIN)

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