SMTL ID : 1mfr.1

CRYSTAL STRUCTURE OF M FERRITIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-24-mer

Ligands

48 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.24, A:E.24, A:E.59, A:H.62 MG.2: 5 residues within 4Å: Chain A: E.59, E.104, Q.138, D.141 Ligands: MG.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.59, A:E.104, A:D.141 MG.3: 6 residues within 4Å: Chain B: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.24, B:E.24, B:E.59, B:H.62 MG.4: 5 residues within 4Å: Chain B: E.59, E.104, Q.138, D.141 Ligands: MG.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.59, B:E.104, B:D.141 MG.5: 6 residues within 4Å: Chain C: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.24, C:E.24, C:E.59, C:H.62 MG.6: 5 residues within 4Å: Chain C: E.59, E.104, Q.138, D.141 Ligands: MG.5 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.59, C:E.104, C:D.141 MG.7: 6 residues within 4Å: Chain D: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.8 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.24, D:E.24, D:E.59, D:H.62 MG.8: 5 residues within 4Å: Chain D: E.59, E.104, Q.138, D.141 Ligands: MG.7 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.59, D:E.104, D:D.141 MG.9: 6 residues within 4Å: Chain E: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.10 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:E.24, E:E.24, E:E.59, E:H.62 MG.10: 5 residues within 4Å: Chain E: E.59, E.104, Q.138, D.141 Ligands: MG.9 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.59, E:E.104, E:D.141 MG.11: 6 residues within 4Å: Chain F: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.12 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.24, F:E.24, F:E.59, F:H.62 MG.12: 5 residues within 4Å: Chain F: E.59, E.104, Q.138, D.141 Ligands: MG.11 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.59, F:E.104, F:D.141 MG.13: 6 residues within 4Å: Chain G: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.14 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:E.24, G:E.24, G:E.59, G:H.62 MG.14: 5 residues within 4Å: Chain G: E.59, E.104, Q.138, D.141 Ligands: MG.13 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.59, G:E.104, G:D.141 MG.15: 6 residues within 4Å: Chain H: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.16 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:E.24, H:E.24, H:E.59, H:H.62 MG.16: 5 residues within 4Å: Chain H: E.59, E.104, Q.138, D.141 Ligands: MG.15 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.59, H:E.104, H:D.141 MG.17: 6 residues within 4Å: Chain I: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.18 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:E.24, I:E.24, I:E.59, I:H.62 MG.18: 5 residues within 4Å: Chain I: E.59, E.104, Q.138, D.141 Ligands: MG.17 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.59, I:E.104, I:D.141 MG.19: 6 residues within 4Å: Chain J: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.20 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:E.24, J:E.24, J:E.59, J:H.62 MG.20: 5 residues within 4Å: Chain J: E.59, E.104, Q.138, D.141 Ligands: MG.19 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.59, J:E.104, J:D.141 MG.21: 6 residues within 4Å: Chain K: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.22 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:E.24, K:E.24, K:E.59, K:H.62 MG.22: 5 residues within 4Å: Chain K: E.59, E.104, Q.138, D.141 Ligands: MG.21 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.59, K:E.104, K:D.141 MG.23: 6 residues within 4Å: Chain L: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.24 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:E.24, L:E.24, L:E.59, L:H.62 MG.24: 5 residues within 4Å: Chain L: E.59, E.104, Q.138, D.141 Ligands: MG.23 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.59, L:E.104, L:D.141 MG.25: 6 residues within 4Å: Chain M: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.26 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:E.24, M:E.24, M:E.59, M:H.62 MG.26: 5 residues within 4Å: Chain M: E.59, E.104, Q.138, D.141 Ligands: MG.25 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:E.59, M:E.104, M:D.141 MG.27: 6 residues within 4Å: Chain N: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.28 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:E.24, N:E.24, N:E.59, N:H.62 MG.28: 5 residues within 4Å: Chain N: E.59, E.104, Q.138, D.141 Ligands: MG.27 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.59, N:E.104, N:D.141 MG.29: 6 residues within 4Å: Chain O: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.30 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:E.24, O:E.24, O:E.59, O:H.62 MG.30: 5 residues within 4Å: Chain O: E.59, E.104, Q.138, D.141 Ligands: MG.29 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:E.59, O:E.104, O:D.141 MG.31: 6 residues within 4Å: Chain P: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.32 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:E.24, P:E.24, P:E.59, P:H.62 MG.32: 5 residues within 4Å: Chain P: E.59, E.104, Q.138, D.141 Ligands: MG.31 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:E.59, P:E.104, P:D.141 MG.33: 6 residues within 4Å: Chain Q: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.34 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:E.24, Q:E.24, Q:E.59, Q:H.62 MG.34: 5 residues within 4Å: Chain Q: E.59, E.104, Q.138, D.141 Ligands: MG.33 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.59, Q:E.104, Q:D.141 MG.35: 6 residues within 4Å: Chain R: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.36 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:E.24, R:E.24, R:E.59, R:H.62 MG.36: 5 residues within 4Å: Chain R: E.59, E.104, Q.138, D.141 Ligands: MG.35 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.59, R:E.104, R:D.141 MG.37: 6 residues within 4Å: Chain S: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.38 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:E.24, S:E.24, S:E.59, S:H.62 MG.38: 5 residues within 4Å: Chain S: E.59, E.104, Q.138, D.141 Ligands: MG.37 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.59, S:E.104, S:D.141 MG.39: 6 residues within 4Å: Chain T: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.40 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:E.24, T:E.24, T:E.59, T:H.62 MG.40: 5 residues within 4Å: Chain T: E.59, E.104, Q.138, D.141 Ligands: MG.39 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:E.59, T:E.104, T:D.141 MG.41: 6 residues within 4Å: Chain U: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.42 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:E.24, U:E.24, U:E.59, U:H.62 MG.42: 5 residues within 4Å: Chain U: E.59, E.104, Q.138, D.141 Ligands: MG.41 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.59, U:E.104, U:D.141 MG.43: 6 residues within 4Å: Chain V: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.44 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:E.24, V:E.24, V:E.59, V:H.62 MG.44: 5 residues within 4Å: Chain V: E.59, E.104, Q.138, D.141 Ligands: MG.43 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.59, V:E.104, V:D.141 MG.45: 6 residues within 4Å: Chain W: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.46 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:E.24, W:E.24, W:E.59, W:H.62 MG.46: 5 residues within 4Å: Chain W: E.59, E.104, Q.138, D.141 Ligands: MG.45 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.59, W:E.104, W:D.141 MG.47: 6 residues within 4Å: Chain X: E.24, E.59, H.62, V.107, Q.138 Ligands: MG.48 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:E.24, X:E.24, X:E.59, X:H.62 MG.48: 5 residues within 4Å: Chain X: E.59, E.104, Q.138, D.141 Ligands: MG.47 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:E.59, X:E.104, X:D.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ha, Y. et al., Crystal structure of bullfrog M ferritin at 2.8 A resolution: analysis of subunit interactions and the binuclear metal center. J.Biol.Inorg.Chem. (1999)

Release Date

1999-06-22

Peptides

M FERRITIN: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

M FERRITIN

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