SMTL ID : 1ml9.1

Structure of the Neurospora SET domain protein DIM-5, a histone lysine methyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.50, C.65, C.112, C.116 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.50, A:C.65, A:C.112, A:C.116 ZN.2: 6 residues within 4Å: Chain A: C.58, C.112, C.118, C.122 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.58, A:C.112, A:C.118, A:C.122 ZN.3: 6 residues within 4Å: Chain A: C.50, C.52, C.58, C.63 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.50, A:C.52, A:C.58, A:C.63

6 x UNK: UNKNOWN(Non-functional Binders)

UNK.4: 3 residues within 4Å: Chain A: H.113, Q.114, R.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.114, A:R.237, A:R.237 UNK.5: 1 residues within 4Å: Chain A: K.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.141 UNK.6: 2 residues within 4Å: Chain A: T.180, R.183 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.180, A:R.183 UNK.7: 1 residues within 4Å: Chain A: Y.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.89 UNK.8: 1 residues within 4Å: Chain A: T.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.132 UNK.9: 2 residues within 4Å: Chain A: K.259, G.260 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase. Cell(Cambridge,Mass.) (2002)

Release Date

2002-10-23

Peptides

Histone H3 methyltransferase DIM-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone H3 methyltransferase DIM-5

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