SMTL ID : 1mq6.1

Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-oligomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.56, N.58, Q.61, E.63, E.66 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.63, A:E.66

1 x XLD: 3-CHLORO-N-[4-CHLORO-2-[[(5-CHLORO-2-PYRIDINYL)AMINO]CARBONYL]-6-METHOXYPHENYL]-4-[[(4,5-DIHYDRO-2-OXAZOLYL)METHYLAMINO]METHYL]-2-THIOPHENECARBOXAMIDE(Non-covalent)

XLD.2: 19 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, E.135, F.162, D.179, A.180, C.181, Q.182, V.203, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.205 Hydrogen bonds: A:G.206, A:G.208, A:G.208 pi-Stacking: A:F.162 Halogen bonds: A:E.135

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.32, S.33, E.34, F.100, P.106 Chain B: R.27, Y.44 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.34, B:R.27, B:Y.44 GOL.4: 4 residues within 4Å: Chain A: L.109, P.110, E.111, L.225 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.112 GOL.5: 3 residues within 4Å: Chain A: S.117 Chain B: C.3, C.14 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:C.14, A:S.117 Water bridges: B:E.16, A:D.113, A:D.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adler, M. et al., Crystal Structures of Two Potent Nonamidine Inhibitors Bound to Factor Xa. Biochemistry (2002)

Release Date

2003-01-28

Peptides

COAGULATION FACTOR X HEAVY CHAIN: A
COAGULATION FACTOR X LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

COAGULATION FACTOR X HEAVY CHAIN

COAGULATION FACTOR X LIGHT CHAIN

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