SMTL ID : 3q3k.1

Factor Xa in complex with a phenylenediamine derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: Y.173, D.174, R.211, K.214 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.173, A:D.174, A:R.211, A:K.214, H2O.2 CA.2: 5 residues within 4Å: Chain A: D.56, N.58, Q.61, E.62, E.66 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:N.58, A:Q.61, A:E.66, H2O.3

1 x D90: N-(2-{[(5-chloro-1H-indol-2-yl)carbonyl]amino}phenyl)-5-methyl-4,5,6,7-tetrahydro[1,3]thiazolo[5,4-c]pyridine-2-carboxamide(Non-covalent)

D90.3: 19 residues within 4Å: Chain A: E.83, T.84, Y.85, E.135, F.162, D.179, A.180, C.181, Q.182, V.203, S.204, W.205, G.206, E.207, G.208, C.209, G.216, I.217, Y.218 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.85, A:E.135, A:A.180, A:V.203, A:W.205 Hydrogen bonds: A:G.208, A:G.208, A:G.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshikawa, K. et al., Design, synthesis and SAR of novel ethylenediamine and phenylenediamine derivatives as factor Xa inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-12-28

Peptides

Activated factor Xa heavy chain: A
Factor X light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Activated factor Xa heavy chain

Factor X light chain

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