SMTL ID : 1mt1.1 (1 other biounit)

The Crystal Structure of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannaschii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-3-mer

Ligands

3 x AG2: AGMATINE(Non-covalent)

AG2.1: 11 residues within 4Å: Chain A: L.31, D.35, L.38, G.44, V.46 Chain E: S.52 Chain F: X.1, I.2, I.55, E.57, R.82 6 PLIP interactions: 2 interactions with chain F, 3 interactions with chain A, 1 interactions with chain E Hydrogen bonds: F:E.57, F:R.82, A:G.44, E:S.52 Hydrophobic interactions: A:L.31 Salt bridges: A:D.35 AG2.2: 13 residues within 4Å: Chain A: S.52 Chain B: X.1, I.2, I.55, M.56, E.57, R.82 Chain C: L.31, F.34, D.35, L.38, G.44, V.46 6 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: C:L.31 Hydrogen bonds: C:G.44, A:S.52, B:E.57, B:R.82 Salt bridges: C:D.35 AG2.3: 11 residues within 4Å: Chain C: S.52 Chain D: X.1, A.24, L.54, I.55, E.57 Chain E: L.31, F.34, D.35, L.38, V.46 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain C Hydrophobic interactions: E:L.31 Hydrogen bonds: E:G.44, C:S.52 Salt bridges: E:D.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolbert, W.D. et al., Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms. Structure (2003)

Release Date

2003-03-25

Peptides

PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN: ACE
PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN

PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN

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