SMTL ID : 1mt1.2 (1 other biounit)

The Crystal Structure of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannaschii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-3-mer

Ligands

2 x AG2: AGMATINE(Non-covalent)

AG2.1: 10 residues within 4Å: Chain A: L.31, D.35, L.38, G.44, V.46 Chain C: S.52 Chain D: X.1, I.2, I.55, R.82 5 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A, 1 interactions with chain D Hydrogen bonds: C:S.52, A:G.44, D:R.82 Hydrophobic interactions: A:L.31 Salt bridges: A:D.35 AG2.2: 12 residues within 4Å: Chain A: S.52 Chain B: X.1, I.2, I.55, E.57, R.82 Chain E: L.31, F.34, D.35, L.38, G.44, V.46 7 PLIP interactions: 4 interactions with chain E, 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: E:L.31, E:F.34 Hydrogen bonds: E:G.44, B:E.57, B:R.82, A:S.52 Salt bridges: E:D.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolbert, W.D. et al., Pyruvoyl-Dependent Arginine Decarboxylase from Methanococcus jannaschii: Crystal Structures of the Self-Cleaved and S53A Proenzyme Forms. Structure (2003)

Release Date

2003-03-25

Peptides

PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN: ACE
PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE BETA CHAIN

PYRUVOYL-DEPENDENT ARGININE DECARBOXYLASE ALPHA CHAIN

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