SMTL ID : 1mun.1

CATALYTIC DOMAIN OF MUTY FROM ESCHERICHIA COLI D138N MUTANT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 10 residues within 4Å: Chain A: R.147, C.148, I.191, C.192, P.197, C.199, C.202, Q.205, C.208, A.211 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.192, A:C.199, A:C.202, A:C.208 SF4.8: 10 residues within 4Å: Chain B: R.147, C.148, I.191, C.192, P.197, C.199, C.202, Q.205, C.208, A.211 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.192, B:C.199, B:C.202, B:C.208

10 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 6 residues within 4Å: Chain A: E.37, S.120, T.121, A.124, N.138, M.185 No protein-ligand interaction detected (PLIP) IMD.3: 6 residues within 4Å: Chain A: A.3, S.4, S.7, Q.170, V.171, P.173 No protein-ligand interaction detected (PLIP) IMD.4: 2 residues within 4Å: Chain A: K.132, H.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.133, A:H.133 pi-Stacking: A:H.133 IMD.5: 3 residues within 4Å: Chain A: L.74, Y.83, R.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.87 IMD.6: 6 residues within 4Å: Chain A: R.19, L.22, W.24, L.40, V.45, Q.182 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.182 Water bridges: A:R.19, A:R.19, A:Q.25, A:E.37, A:E.37, A:D.186 IMD.9: 6 residues within 4Å: Chain B: E.37, S.120, T.121, A.124, N.138, M.185 No protein-ligand interaction detected (PLIP) IMD.10: 6 residues within 4Å: Chain B: A.3, S.4, S.7, Q.170, V.171, P.173 No protein-ligand interaction detected (PLIP) IMD.11: 2 residues within 4Å: Chain B: K.132, H.133 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.133 pi-Stacking: B:H.133 IMD.12: 3 residues within 4Å: Chain B: L.74, Y.83, R.87 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.87 IMD.13: 6 residues within 4Å: Chain B: R.19, L.22, W.24, L.40, V.45, Q.182 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.182 Water bridges: B:R.19, B:R.19, B:R.19, B:Q.25, B:E.37, B:E.37

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: R.58, F.59, D.64, N.67, A.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.58, A:R.58 GOL.14: 5 residues within 4Å: Chain B: R.58, F.59, D.64, N.67, A.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.58, B:R.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guan, Y. et al., MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily. Nat.Struct.Biol. (1998)

Release Date

1999-08-26

Peptides

ADENINE GLYCOSYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ADENINE GLYCOSYLASE

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