SMTL ID : 1n1h.1

Initiation complex of polymerase lambda3 from reovirus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x U- A- G- C: 5'-R(*AP*UP*UP*AP*GP*C)-3'(Non-covalent)

U-A-G-C.1: 25 residues within 4Å: Chain A: Q.454, T.457, R.459, G.460, G.461, S.462, A.464, K.486, A.488, K.490, S.514, M.515, G.516, R.518, I.528, P.530, Q.536, S.682, G.683, S.684, T.685, N.807, S.809 Ligands: CH1.6, GH3.7 Protein-ligand interaction information (PLIP) not available

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain A: D.585, I.586, S.587, D.734 Ligands: MN.3, CH1.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.585, A:I.586, A:D.734 MN.3: 5 residues within 4Å: Chain A: D.585, D.734, D.735 Ligands: MN.2, CH1.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.585, A:D.734, A:D.735

1 x G7M: N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

G7M.4: 13 residues within 4Å: Chain A: S.211, E.811, P.813, W.814, P.815, Q.852, R.853, T.854, M.855, L.1031, M.1034, D.1035 Ligands: GDP.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.211, A:E.811, A:W.814, A:M.855 Water bridges: A:R.1028 Salt bridges: A:D.1035

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.5: 8 residues within 4Å: Chain A: K.32, S.35, M.36, R.851, Q.852, R.853, Y.862 Ligands: G7M.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.35, A:R.851 Water bridges: A:S.35, A:M.36 pi-Stacking: A:Y.862

1 x CH1: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CH1.6: 17 residues within 4Å: Chain A: R.518, R.523, R.524, R.526, D.585, I.586, S.587, A.588, C.589, D.590, S.682, T.687, D.734 Ligands: U-A-G-C.1, MN.2, MN.3, GH3.7 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.518, A:D.585, A:A.588, A:C.589, A:S.682 Water bridges: A:R.524 Salt bridges: A:R.523, A:R.523, A:R.523, A:R.524, A:R.524, A:R.526

1 x GH3: 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GH3.7: 11 residues within 4Å: Chain A: Q.520, G.560, S.561, K.566, Q.732, K.783, R.797, H.798 Ligands: U-A-G-C.1, U-A-G-C.1, CH1.6 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.561, A:Q.732 Salt bridges: A:K.566, A:K.566, A:K.783, A:R.797, A:R.797, A:R.797, A:H.798

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, Y. et al., RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3. Cell(Cambridge,Mass.) (2002)

Release Date

2002-12-25

Peptides

Minor core protein lambda 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Minor core protein lambda 3

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