SMTL ID : 1n35.1

lambda3 elongation complex with four phosphodiester bond formed

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x G- G- G- G- G: 5'-R(P*GP*GP*GP*GP*G)-3'(Non-covalent)

G-G-G-G-G.1: 20 residues within 4Å: Chain A: C.6, C.7, C.8, C.9, C.10 Chain B: R.459, G.560, S.561, A.562, K.566, K.783, R.797, H.798, K.803, E.812, D.819, Q.820, G.823, N.827 Ligands: CH1.4 Protein-ligand interaction information (PLIP) not available

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain B: D.585, I.586, S.587, D.734 Ligands: MN.3, CH1.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.585, B:I.586, B:D.734 MN.3: 5 residues within 4Å: Chain B: D.585, D.734, D.735 Ligands: MN.2, CH1.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.585, B:D.734, B:D.735

3 x CH1: 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CH1.4: 16 residues within 4Å: Chain A: G.5, C.6 Chain B: R.518, R.523, R.524, R.526, I.586, S.587, A.588, D.590, S.682, T.687, D.734 Ligands: G-G-G-G-G.1, MN.2, MN.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:A.588, B:C.589, B:S.682 Water bridges: B:K.783 Salt bridges: B:R.523, B:R.523, B:R.523, B:R.524, B:R.524, B:R.526 CH1.5: 7 residues within 4Å: Chain B: K.32, S.35, M.36, R.851, R.853, Y.862 Ligands: CH1.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.35, B:R.851 Water bridges: B:R.853, B:Y.862, B:Y.862 pi-Stacking: B:Y.862 CH1.6: 9 residues within 4Å: Chain B: W.814, P.815, Q.852, R.853, T.854, M.855, M.1034, D.1035 Ligands: CH1.5 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.814, B:Q.852 Hydrogen bonds: B:Q.852, B:Q.852, B:R.853, B:M.855, B:D.1035 Water bridges: B:R.853

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, Y. et al., RNA Synthesis in a Cage--Structural Studies of Reovirus Polymerase [lambda] 3. Cell(Cambridge,Mass.) (2002)

Release Date

2002-12-25

Peptides

Minor core protein lambda 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

Minor core protein lambda 3

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