SMTL ID : 1nb6.2 (1 other biounit)

HC-J4 RNA polymerase complexed with UTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.220, D.318, D.319 Ligands: MN.2, UTP.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.220, A:D.318, A:D.318, A:D.319, H2O.11 MN.2: 5 residues within 4Å: Chain A: D.220, T.221, D.318 Ligands: MN.1, UTP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.220, A:T.221, A:D.318

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.3: 17 residues within 4Å: Chain A: R.48, K.51, K.141, R.158, D.220, R.222, C.223, F.224, D.225, S.282, T.287, N.291, D.318, S.556, G.557 Ligands: MN.1, MN.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:C.223, A:F.224, A:D.225, A:T.287, A:N.291, A:S.556, A:S.556 Water bridges: A:K.51, A:K.51 Salt bridges: A:R.48, A:K.51, A:R.222, A:R.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Farrell, D. et al., Substrate complexes of hepatitis C virus RNA polymerase (HC-J4): structural evidence for nucleotide import and de-novo initiation. J.Mol.Biol. (2003)

Release Date

2003-03-25

Peptides

polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

polyprotein

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